Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0055 ATGGACAGCATTCCTCTGCTGATCAATGGTGTAGGGGCGGCGGAGGAGGTGGTGGTGGTGGGTGAGGATGGCGACTACGTGGCGGTGAAGGGGTTGAAGGAGGTGAAGAAGGTGTTTTGGATAGAAACAATGAAACTGTGGGAGATTGCATTGCCAATAGTTTTCAACATATTGTGTCAATATGGTGTTAACTCAATCACTAGCATCTTTGTTGGTCATCTTGGTGACATTCAACTCTCTGCTGTTTCTCTCACTAACTCTGTCATTGGTACCTTTGCTTTTGGCTTCATGCTTGGCATGGGAAGCGCAACAGAGACACTCTGTGGTCAAGCTTTTGGTGCTGGGCAGGTTAACCTGCTTGGTGTTTATATGCAACGCTCGTGGGTAATTTTGTTTGCCACCAGTATCTTACTCTTGCCAATTTACATTTTTGCTGCTCCAATTTTAAAGGTTCTTGGCCAACAGAAAGATATAGCTGATCTTGCTGGAAGTTTCGCTCTTTTAGTAATTCCTCAATTTCTTTCACTTCCCTTAAATTTCCCAACCCAAAAGTTCCTTCAAGCTCAAAGTAAGGTTAGCGTGATTGCGTGGGTTGGGTTTGTGGCTCTAATTATGCACATCGGTATGCTGTGGCTCTTAATTTATGTCTTGGATTGGGGCCTAACCGGTGCAGCGGTGGCATTTAATATCACTAGTTGGGGAATCACAGTGGCTCAACTTGTTTATGTTGTGGGATGGTGTAAGGAAGGATGGAATGGTTTATCATGGTTGGCTTTTAAGGATATATGGGCTTTTGTTAGGCTCTCCCTTGCATCAGCTATAATGCTTTGCCTTGAAGTCTGGTATATGATGAGTGTCATTGTTCTTGCTGGCCACCTTGATAATGCAGTCATTGCTGTTGATTCTCTGTCTATATGTATGAATTACAATGGGTGGGAAGGCATGCTCTTTATTGGAGTAAATGCTGCTATCAGTGTTAGAGTTTCCAATGAACTTGGACTTGGACATCCAAGAGCTACCAAATACTCAGTCTATGTGACAGTCTTTCAGTCTCTATTCATTGGGATCTTTTTCATGGCTGTAATTTTGATAACTAGAGACTATTTTGCTATCATTTTCACCAGCAGTAAGACTGTTCAAGATGCGGTCTCGAAGCTAGGATGTCTCCTTGCTGTGACAATGGTATTAAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGGGCTTGTGGCTTACATCAATATTGGTTGTTATTATTTGTTTGGCCTTCCAATGGGGTTCCTTCTTGGTTATAAAGTAAATCTGGGGGTTAAGGGATTATGGGGAGGTATGATATGTGGAGTAGTTCTCCAGACCTTGATACTCTTATTGATACTTTACAAAACCAATTGGAAGAAAGAGGTAGGCAATGCTGCTTCTCAATCTCTGAAACTTCTCCAAGCATCTTTCTTCTAG 1473 0.4277 MDSIPLLINGVGAAEEVVVVGEDGDYVAVKGLKEVKKVFWIETMKLWEIALPIVFNILCQYGVNSITSIFVGHLGDIQLSAVSLTNSVIGTFAFGFMLGMGSATETLCGQAFGAGQVNLLGVYMQRSWVILFATSILLLPIYIFAAPILKVLGQQKDIADLAGSFALLVIPQFLSLPLNFPTQKFLQAQSKVSVIAWVGFVALIMHIGMLWLLIYVLDWGLTGAAVAFNITSWGITVAQLVYVVGWCKEGWNGLSWLAFKDIWAFVRLSLASAIMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNYNGWEGMLFIGVNAAISVRVSNELGLGHPRATKYSVYVTVFQSLFIGIFFMAVILITRDYFAIIFTSSKTVQDAVSKLGCLLAVTMVLNSVQPVISGVAVGGGWQGLVAYINIGCYYLFGLPMGFLLGYKVNLGVKGLWGGMICGVVLQTLILLLILYKTNWKKEVGNAASQSLKLLQASFF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0055 490 CDD MATE_eukaryotic 42 474 IPR045069 GO:0042910|GO:1990961
Lal24g0055 490 PANTHER PROTEIN DETOXIFICATION 17 477 - -
Lal24g0055 490 TIGRFAM matE: MATE efflux family protein 52 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal24g0055 490 Pfam MatE 52 211 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal24g0055 490 Pfam MatE 272 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal24g0055 490 PANTHER MULTIDRUG RESISTANCE PROTEIN 17 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0055 Lal-Chr24 340957 344725 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0055 K03327 - gmx:100799559 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0055 24 340957 344725 Lal24g0055 24 340957 344725 ECH