Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1584 ATGGATGCAGGATCATTCAGTTGTTCTTCTTCCTCCACATCCGTCAAAACACAATCTCGTTGCCCTCTTCAGGAGCAACACTTTATTCAGAGAAAGAAATCCCAAGAAAACTTGGACAGATTCATACCAAATCGATCGGCAATGGATTTTGATTATGCTCACTACATGCTGACAGAGGGGGCAAAAGGTAAGGAAAACCCAGCTCTGAACTCCCCCTCCAAAGACGCCTACAGGAAGCAGCTTGCAGAATCCTTAAACATGAACCGGACCCGAATTCTCGCATTCAAGAACAAGCCACCAACACCGGTTGACTTGATCACTCACGACAACTTCTCCACTCATCATCAAGATAAACAAACCAAGCCCAAGCGATACATTCCCCAGAACTCTGAGAGGACATTGGATGCTCCAGACCTTGTGGATGACTACTATCTCAATCTACTGGATTGGGGAAGTGCCAATGTTCTTGCAATAGCACTTGGAAACACAGTGTATTTGTGGGATGCATCAAATGGTTCTACTTCAGAGCTTGTCACAGTTGATGATGAAAGTGGCCCTATCACTTCCGTCAGCTGGGCTCCCGATGGCCGGCATATTGCTGTTGGCTTGAACAACTCTGAAGTAGAATTATGGGATTCAACATCAAATAGAAAGTTGAGAAGCTTGAGAGGTGGCCATAGGCAGCGAGTGGGTGCTTTGGCATGGAACAATCACATACTCACAACTGGAGGGATGGATGGTAGAATTGTTAACAACGATGTCCGAATCAGATCACCCATTGTTGAAACCTACAGAGGTCATGAACAAGAGGTTTGTGGGCTTAAATGGTCACCCTCTGGCCAACAATTAGCCAGCGGAGGGAATGATAATCTGCTATATGTCTGGGACAGATCTTCAGCATCTTCCAATTCCGCAACACAGTGGCTTCACAGACTTGAAGATCATACATCTGCAGTGAAAGCCCTTGCTTGGTGCCCTTTCCAAGGGAATTTGCTAGCTTCTGGTGGAGGCAGTGGCGACCGTTGCATTAAGTTTTGGAATACCCACACAGGTGCATGCTTGAACTCAGTTGACACTGGGTCTCAGGTATGTTCTCTGCTGTGGAACAAGAACGAGAGGGAGTTACTCAGCTCTCATGGTTTTACTCACAATCAACTAACACTTTGGAAATACCCTTCAATGGTGAAGATGGCTGAGCTCACTGGCCATACTTCCAGAGTTCTTTACATGGCTCAGAGCCCAGATGGTTGCACAGTGGCATCAGCAGCAGCAGATGAAACATTGAGGTTCTGGAATGTTTTTGGAGCTCCAGAAGCAGTAACTAAGGCTACTCCAAAAGCAAGAGCTGAGCCATTTTCACATTTGAATCGCATTAGATAA 1380 0.4609 MDAGSFSCSSSSTSVKTQSRCPLQEQHFIQRKKSQENLDRFIPNRSAMDFDYAHYMLTEGAKGKENPALNSPSKDAYRKQLAESLNMNRTRILAFKNKPPTPVDLITHDNFSTHHQDKQTKPKRYIPQNSERTLDAPDLVDDYYLNLLDWGSANVLAIALGNTVYLWDASNGSTSELVTVDDESGPITSVSWAPDGRHIAVGLNNSEVELWDSTSNRKLRSLRGGHRQRVGALAWNNHILTTGGMDGRIVNNDVRIRSPIVETYRGHEQEVCGLKWSPSGQQLASGGNDNLLYVWDRSSASSNSATQWLHRLEDHTSAVKALAWCPFQGNLLASGGGSGDRCIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFTHNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGAPEAVTKATPKARAEPFSHLNRIR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1584 459 ProSitePatterns Trp-Asp (WD) repeats signature. 419 433 IPR019775 -
Lal23g1584 459 PANTHER CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE 1 457 - -
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 433 IPR001680 GO:0005515
Lal23g1584 459 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 1 457 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lal23g1584 459 MobiDBLite consensus disorder prediction 1 20 - -
Lal23g1584 459 SMART WD40_4 173 212 IPR001680 GO:0005515
Lal23g1584 459 SMART WD40_4 305 347 IPR001680 GO:0005515
Lal23g1584 459 SMART WD40_4 393 432 IPR001680 GO:0005515
Lal23g1584 459 SMART WD40_4 257 296 IPR001680 GO:0005515
Lal23g1584 459 SMART WD40_4 350 390 IPR001680 GO:0005515
Lal23g1584 459 SMART WD40_4 215 253 IPR001680 GO:0005515
Lal23g1584 459 Gene3D - 88 435 IPR015943 GO:0005515
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 433 - -
Lal23g1584 459 Pfam Anaphase-promoting complex subunit 4 WD40 domain 179 237 IPR024977 -
Lal23g1584 459 SUPERFAMILY WD40 repeat-like 144 433 IPR036322 GO:0005515
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Lal23g1584 459 Pfam WD domain, G-beta repeat 309 347 IPR001680 GO:0005515
Lal23g1584 459 Pfam WD domain, G-beta repeat 397 432 IPR001680 GO:0005515
Lal23g1584 459 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Lal23g1584 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 212 - -
Lal23g1584 459 CDD WD40 162 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1584 Lal-Chr23 15788768 15791385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1584 236 433 Miscellaneous Gene Families AT5G08390 22.111 2.38e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1584 K03363 - gmx:100784841 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1584 23 15788768 15791385 Lal23g1584 23 15788768 15791385 ECH