Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1540 ATGATGAGATACTATTTGGTAGTTAGTGGTCTGTTATTGTGGTGTGCCATGGTTGGTCACAATGGCTTAGCCATGGTTATGAATGAGAAATTACTAAACACTTCAGCTAGTCAGGACTTCTATGCTGATGCTCTTGGCAAGGCCATTTTGTTTTTTGAAGGACAACGCTCAGGGAAATTGCCCAAACAAAGGGTCACTTGGCGGGGAGACTCGGCTCTCTCTGATGGCAAACTTGAAAACGTGGATTTGAGTGGAGGGTACTATGATGCTGGTGATAATGTGAAGTTTGGATGGACAATATCATATTCAGTGTCCTTATTGAGTTGGAGTGCTATTGAGTTTAGGGGTCAGATACGTTCAGTTAATAAGCAACTTCACCACCTCCGAAATGCTATCCGCTGGGGCACAGATTTCATATTGAAATCCCACACTTCCCCAACCACCCTCTATACTCAGGTGGGAGATGGAAATGGAGATCACCAATGTTGGGAGCGTCCAGAAGACATGGATACACCAAGAACACTGTACAAGATTGATGCTAATTCACCTGGAACAGAAGCTGCAGCTGATGCTGCTGCTGCTCTTGCTGCTGCTTCAATAGTCTTCAAGCAATCAGATCCTAATTATTCTTCTATTCTCTTAGCCAAGTCCAAATCACTGTTTGATTTTGCAGACAAGTATAGAGGTTCTTATTCGGCTTCTTGTCCATTCTATTGCTCCTACTCAGGTTATGAGGATGAACTGCTATGGGCTGCTTCTTGGCTATACAAGGCAAGTGGAGAAAGCAAGTACTTGGACTATGTCTTAAGCAACCAAGGTTGGAGTCACGGCGTGCCTGAGTTAAGCTGGGATAACAAATTTGTTGGAGCTCAGATATTACTCACTGAGGAATTCTATAGTGGGAAGAATCAGTTGAGTAAATTCAAGGGTGATGCTGAATCATTTTTATGTACAGTGATGCCAGGAAGTAGCTCTGTACAGATTAAGACAACTCCTGGAGGACTTCTGTTTACTAGAGACGCCAGCAATTTGCAATATGCCACAGGCTCAACACTGGCGCTCATGATTTTCTCCAAAATCTTAAAGAAAAATCGTATTGATGGAGTCCAATGTGGCTCTGTGCATTTCTCCGCGTCTCAAATTAAAACCTTCGCTAAAACACAGGTGGACTACATATTAGGAAACAATCCCATGAGCATGTCCTACATGGTGGGTTTTGGAAGTAAATTCCCACAGCAATTACATCATAGAGGTTCATCAATCCCTTCAATAAAAGATCACCAACCCAAGGTGGGGTGCAGTGAAGGTCAATCAAATTATTATAACTCCCCTAATCCAAATCCCAACATTCATGTGGGTGCAATTGTTGGAGGCCCTGATTCCAATGACCATTTCAGTGATGCAAGATCTGACTATTCTCACAGCGAACCTACCACCTATATTAATGCTGCTTTCGTGGGTTCAGTGGCTGCTTTGCTTAGCAGAAACGAACAAGGAACTACACAATTTTCCCTTAATGATGAAAGGATTGTGAATTAA 1539 0.4276 MMRYYLVVSGLLLWCAMVGHNGLAMVMNEKLLNTSASQDFYADALGKAILFFEGQRSGKLPKQRVTWRGDSALSDGKLENVDLSGGYYDAGDNVKFGWTISYSVSLLSWSAIEFRGQIRSVNKQLHHLRNAIRWGTDFILKSHTSPTTLYTQVGDGNGDHQCWERPEDMDTPRTLYKIDANSPGTEAAADAAAALAAASIVFKQSDPNYSSILLAKSKSLFDFADKYRGSYSASCPFYCSYSGYEDELLWAASWLYKASGESKYLDYVLSNQGWSHGVPELSWDNKFVGAQILLTEEFYSGKNQLSKFKGDAESFLCTVMPGSSSVQIKTTPGGLLFTRDASNLQYATGSTLALMIFSKILKKNRIDGVQCGSVHFSASQIKTFAKTQVDYILGNNPMSMSYMVGFGSKFPQQLHHRGSSIPSIKDHQPKVGCSEGQSNYYNSPNPNPNIHVGAIVGGPDSNDHFSDARSDYSHSEPTTYINAAFVGSVAALLSRNEQGTTQFSLNDERIVN 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1540 512 PANTHER ENDOGLUCANASE 18-RELATED 3 501 - -
Lal23g1540 512 SUPERFAMILY Six-hairpin glycosidases 37 499 IPR008928 GO:0005975
Lal23g1540 512 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Lal23g1540 512 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Lal23g1540 512 Pfam Glycosyl hydrolase family 9 41 487 IPR001701 GO:0004553|GO:0005975
Lal23g1540 512 Gene3D - 36 505 IPR012341 GO:0005975
Lal23g1540 512 PANTHER ENDO-1,4-BETA-GLUCANASE 3 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1540 Lal-Chr23 15520156 15523818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1540 41 494 Glycoside Hydrolase AT4G23560 69.011 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1540 - - cam:101489803 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1540 23 15520156 15523818 Lal23g1540 23 15520156 15523818 ECH