Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1539 ATGGCATATTCCTTTACAGCATCTTCTATCTCTATCCCTTTCACAAAGTCTTCTCTTCTTTTTCCCTCTTCCTTTCATTCTTCTTCTTCTTCTTCTTTCTCTATCAAACATCACCATGCCTTACCTCTATCCCTCTCAGTTTCTGCTTCTTCAACTTCAACCACTGCCATTGAAACCGACAAACCCCAATTCTCATCCAAGCCTCTTCCATTTCGGGTCGGTCACGGATTTGACCTCCACCGTTTGGAACCCGGTTACCCTTTAATTATCGGAGGTATCAACATCCCACACGATCGTGGTTGCGAGGCTCACTCCGATGGGGATGTTCTGTTACACTGTGTGGTGGATGCAATTTTGGGTGCTTTAGGTCTTCCTGATATTGGTCAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGACTCTTCTGTCTTCATCCATGAATCTGTAAGGCTTATGCATGAGGCAGGTTATGATATTGGAAACTTAGATGCTACATTGATACTTCAAAGGCCAAAGCTAAGCCCACACAAGGATACTATCAAGGCCAACTTAGCTGCACTGCTTGGAGTTGACCCTTCTATTGTAAATATCAAAGCAAAAACTCATGAAAAGGTAGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTGGTTCTTCTGATGAAGAAATGA 684 0.4284 MAYSFTASSISIPFTKSSLLFPSSFHSSSSSSFSIKHHHALPLSLSVSASSTSTTAIETDKPQFSSKPLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFIHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDTIKANLAALLGVDPSIVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1539 227 Pfam YgbB family 71 224 IPR003526 GO:0008685|GO:0016114
Lal23g1539 227 CDD MECDP_synthase 72 224 IPR003526 GO:0008685|GO:0016114
Lal23g1539 227 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE 68 227 - -
Lal23g1539 227 TIGRFAM ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 72 226 IPR003526 GO:0008685|GO:0016114
Lal23g1539 227 SUPERFAMILY IpsF-like 70 226 IPR036571 GO:0008685|GO:0016114
Lal23g1539 227 Hamap 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 71 226 IPR003526 GO:0008685|GO:0016114
Lal23g1539 227 ProSitePatterns 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 105 120 IPR020555 GO:0008685
Lal23g1539 227 Gene3D - 69 227 IPR036571 GO:0008685|GO:0016114
Lal23g1539 227 PANTHER 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC 68 227 IPR003526 GO:0008685|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1539 K01770 - gmx:100306378 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1539 23 15514481 15517095 Lal23g1539 23 15514481 15517095 ECH