Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1516 ATGAGTTACTTAGCCAAACTCTCACTATGCTCCCTCTTCATGATTTGTGCTTCTTTGATAACAATCCAAGCAGCAAATTTTGAGATAGTCAATAACTGTCCTTACACAGTTTGGGCAGCTGCCAGCCCCGGAGGTGGCATGCGCCTCGAAAGAGGCCAAACATGGAACCTCTGGGTGAATGCTGGCACTTCCATGGCACGTATCTGGGGCCGCACCGGTTGCAACTTTGATGGCAGCGGTCGTGGCCGCTGCCAAACTGGAGACTGCACCGGTGGACTCAACTGCCAAGGTTGGGGTGTCCCTCCAAACACATTGGCTGAATTTGCATTGAACCAATATGCAAATCAAGATTTCTATGATATCTCCCTTGTGGATGGTTTCAACATCCCAATGGACTTCTACCCTCTCAATGGAGGCTGTCATAAACTCAGTTGCACTGCTGATATTAATGGACAGTGCCCTAATGAGTTGAGGGCACCTGGTGGGTGTAATAACCCATGCACAGTGTTTAAGACAAATGAGTATTGTTGCACCAATGGACAAGGAAGTTGTGGACCCACTTACTTCTCAAGGTTCTTCAAAGATAGGTGCAGAGATTCTTACAGCTACCCTCAGGATGACCCAACAAGCACTTTCACATGCCCTGCTGGTTCTAACTACAAGGTTGTCTTTTGTCCCTTGGGACAACCTCATATTCAGATGCCTGCTAATATCACCAATCAGTATTGA 729 0.4733 MSYLAKLSLCSLFMICASLITIQAANFEIVNNCPYTVWAAASPGGGMRLERGQTWNLWVNAGTSMARIWGRTGCNFDGSGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQYANQDFYDISLVDGFNIPMDFYPLNGGCHKLSCTADINGQCPNELRAPGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCRDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGQPHIQMPANITNQY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1516 242 ProSiteProfiles Thaumatin family profile. 24 226 IPR001938 -
Lal23g1516 242 PANTHER OS03G0233200 PROTEIN 13 226 IPR001938 -
Lal23g1516 242 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Lal23g1516 242 SUPERFAMILY Osmotin, thaumatin-like protein 26 226 IPR037176 -
Lal23g1516 242 SMART tha2 27 226 IPR001938 -
Lal23g1516 242 PIRSF PR5 1 241 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Lal23g1516 242 PRINTS Pathogenesis-related protein signature 216 225 IPR001938 -
Lal23g1516 242 PANTHER PATHOGENESIS-RELATED PROTEIN R MINOR FORM 13 226 - -
Lal23g1516 242 Pfam Thaumatin family 31 226 IPR001938 -
Lal23g1516 242 Gene3D Thaumatin 24 227 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1516 Lal-Chr23 15344564 15345292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1516 7 240 Receptor kinase-like Gene Family AT5G38280 34.483 1.63e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1516 - - gmx:100240704 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1516 23 15344564 15345292 Lal23g1516 23 15344564 15345292 ECH