LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1505	ATGGTTCCAATCAGAATGAACAACAACAAGCGTGTCGTTCTTTGTCGAATGAAAACCCTCTTCACCTCACAATCCCAGAGCTTCCACTCCCTTACCCCCAAAGGAGACATTCAACACCAACTATCTCCAGAAATGACCTCACACTACTCCGATTCCCAAGATCGTACTGACCTCTCAAAATGGAAGGCTTTGGATGCAAGGGAACTTGGTATAACTAGTTCTATGATTTCACAACAGTCTCGGGTTATTCTCGACCTTCTTAGGAGAAAGGGATTTGATTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTACTGAAAAGAACTCCAAAAGACTTTGATGTGATCACCACAGCAGAGCTCACAGAGGTGCGAAAGCATTTTCGTCGTTTAGGTCGTGCAGAGGTTGTTGGGCGGCGTTTTCCAGTATGCCTGGTCCATATAAATGGTTCTATAGTAGAGGTAACCAGTTTTGATACAGTGGCACGGACTTCCATAGGGAAGGCACCTAATTTATACTCTATATTGCCCAAATTCAGTAATAAAAAAGATTTAATTCGCTGCAAAAATTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCATTTGCCAATAAAATATATGATTATGCCAATGGAATGGCTGATTTGAAGTCGTTGAAGCTAGAAACAGTGATCCCTGCTCAAGTGTCTTTTGAAGAGGATCCTGGGAGAATTTTGCGCGGCTTCAGAATTGCTGCTCGTCTAGGCTTATCATTATCAAGGGAGACTGAGGCTGCACTAAGGGCTTGTTCGTCACTAGTTAAGAGCTTGGATAAGAACAAATTAATGATTGAGTTGAACTATATGCTGTCCTATGGAGCTGCTGAACCATCCCTACGCTTGCTGTGGAAATTCAAATTGCTTGACTTTTTACTTCCTCTGCATGCTGCATATCTTGACGAACAGTCAAATAAAGAAGATGCTCACACTTCCAATATGTTGATGAAACTATTTTGCCATCTGGATAATTTGGTTGCATGTGGTCAACCTTCTGATTGCACTCTATGGATTGGATTGCTAGTGTTTCACCTGGCATTAGTAAACAACCCTCAAGATGCAGTTGTGGTTTGGACGTTTGCTTCTGTTCTATATCATGGGGAGTGGGGAAAAGGTGTTAAATTTGCTAAAGAACGTATAGAGATGTGCATTAATTTTGCACCTGAAATAATGAAGTCCAATGTATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAGTTGGCATCTCTGGTGATGAACTCCATACCTGCTCTGGTTGAGAATAATATTTGTGTTCAGTTCATGTCGAGATACCCATCTTTTCCACGCTCTGGCATAGTATTTGTACCAAGGAAAGCAGGGAAACATGTTTCTGAACTTTTCAAAGTGCTGGTCAATGGTATCCAATTTTATAGGAGTGAAAGAAAAAGCTCAAAGATAAATTATAACATGCTTGGGAAGGGTCACCTTCCAGAGGCTAGATATGTTTTTGGCAAAATTGTTCTTGAAACTATGAATAGCGGAATTGTTGGGGATGTGAAGGATTTTGAGGCTGCAAAATGTCATCTTAAGACTGAGGGCGCCAAGGAAATTGACCAATTACAACTTTCAGATCCTGTAAACCATCAATTGGTAGCAAAGAAAAATAAAAGACGTGTTTCATCAACACCAAATCCTGAACATAACCAAGAAAAAATCAAGAAACAGAAATTGGTTGAGAATGGAGGTACTCCAGTGCAGAAAATGGGCAAGGGGAACCATGAATTGTTTATGAAATTGGAGTACAAGGAAACCAATGAAGAGCACCAGAAGGTTGATCTATCTATGAAGGACTCTGGTGCGAGAAAAAAAAAGTATCACAGAAAACAGCTGATAAATGATAGAAACCAAAGTGGTATTACTAGTAAAAGCTCTTTAGACAAAGCTAAGCATGTGAAGATGGTTGAACAAAACCGGTGCACACCAACACAGTCCACCGTGTCCAAAAATCATCAAGTGACCGCCGACAACTGCAACATAAGGGTGGATGCAAAAACAACAAAGGAGTCTGACTTGAAGAAAAACTTGCATTTATCAGCTGATGAAGATTTCAAAAAGAAAGGACAACAACCACCTAAAAGAAAGCAAAGTCGGTCAACACTGTCCAGTCTCTTCAAATAA	2193	0.4026	MVPIRMNNNKRVVLCRMKTLFTSQSQSFHSLTPKGDIQHQLSPEMTSHYSDSQDRTDLSKWKALDARELGITSSMISQQSRVILDLLRRKGFDSYLVGGCVRDLLLKRTPKDFDVITTAELTEVRKHFRRLGRAEVVGRRFPVCLVHINGSIVEVTSFDTVARTSIGKAPNLYSILPKFSNKKDLIRCKNSLRRDFTINSLFYDPFANKIYDYANGMADLKSLKLETVIPAQVSFEEDPGRILRGFRIAARLGLSLSRETEAALRACSSLVKSLDKNKLMIELNYMLSYGAAEPSLRLLWKFKLLDFLLPLHAAYLDEQSNKEDAHTSNMLMKLFCHLDNLVACGQPSDCTLWIGLLVFHLALVNNPQDAVVVWTFASVLYHGEWGKGVKFAKERIEMCINFAPEIMKSNVYKSDEEIAKAVTKLASLVMNSIPALVENNICVQFMSRYPSFPRSGIVFVPRKAGKHVSELFKVLVNGIQFYRSERKSSKINYNMLGKGHLPEARYVFGKIVLETMNSGIVGDVKDFEAAKCHLKTEGAKEIDQLQLSDPVNHQLVAKKNKRRVSSTPNPEHNQEKIKKQKLVENGGTPVQKMGKGNHELFMKLEYKETNEEHQKVDLSMKDSGARKKKYHRKQLINDRNQSGITSKSSLDKAKHVKMVEQNRCTPTQSTVSKNHQVTADNCNIRVDAKTTKESDLKKNLHLSADEDFKKKGQQPPKRKQSRSTLSSLFK	730

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1505	730	CDD	NT_ClassII-CCAase	81	221	IPR002646	GO:0003723\|GO:0006396\|GO:0016779
	Lal23g1505	730	SUPERFAMILY	Nucleotidyltransferase	69	221	IPR043519	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	559	594	-	-
	Lal23g1505	730	Gene3D	Beta Polymerase, domain 2	61	222	IPR043519	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	691	714	-	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	564	582	-	-
	Lal23g1505	730	Pfam	Poly A polymerase head domain	95	224	IPR002646	GO:0003723\|GO:0006396\|GO:0016779
	Lal23g1505	730	Pfam	Probable RNA and SrmB- binding site of polymerase A	253	315	IPR032828	-
	Lal23g1505	730	PANTHER	POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN	8	730	-	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	610	624	-	-
	Lal23g1505	730	Gene3D	-	225	431	-	-
	Lal23g1505	730	PANTHER	POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN	8	730	-	-
	Lal23g1505	730	SUPERFAMILY	Poly A polymerase C-terminal region-like	225	369	-	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	691	730	-	-
	Lal23g1505	730	MobiDBLite	consensus disorder prediction	610	653	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1505	Lal-Chr23	15267292	15275452	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1505	-		-	ccaj:109801320	920.613

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal23g1505	23	15267292	15275452	Lal23g1505	23	15267292	15275452	ECH