Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1479 ATGTTAGACGGAACCGAAGATGAAGAGAAATTTTTGGCTGCCGGTATCGCTGGGCTTCAACAAAATTCATTCTACATGCACCGTGCATTGGATTCTAATAATCTCAAAGATGCGTTGAAATATTCTGCTCAGATGCTTTCTGAGCTCAGAACTTCTAAGCTTTCTCCTCACAAATACTATGAACTCTATATGCGCGCCTTTGATCAGTTAAGGAAGCTGGAGATGTTTTTTGAGGAAGAGACTCGTCGCGGTTGTTCCATTATTGATCTTTATGAACTCGTTCAGCACGCTGGCAACATTTTGCCTAGATTGTATCTCCTCTGTACAATAGGATCTGTATACATCAAATCCAAGGAAGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTGGAAATGTGTCGTGGTATTCAGAACCCTGTTCGTGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCTGATATTGGTTCCGAGTATGAAGGGGATGCGGATACTGTAGTTGATGCTGTAGAGTTTGTACTCCAAAATTTCACGGAAATGAATAAACTGTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGGGAAGGAGAAACGGGAGAAAGAAAGGAATGAGCTGCGTGATCTTGTCGGGAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTTGACCTTGATATGTACAAATATGTTGTTCTTCCCAGAGTACTGGAGCAGGTTGTGAATTGCAAAGATATGCTGTCGCAGTTCTACTTGATGGATTGCATAATTCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTATTGCTGGGTGCTTACCCCCAGCTCCAACCATCTGTCGACATTAAGACAGTGCTGTCTCAGTTAATGGAAAGGCTTTCAAATTATGCTGCTTCAAGTGCAGAGGTGTTGCCAGAATTTTTGCAAGTGGAAGCATTTTCCAAGTTAAGCAATGCCATTGGCAAGGTTATAGAGGCACAACCTGACATGCCTACTTTTGGAGTTGTAACTTTATATTCATCTCTTCTCAAATTCACTCTTCATGTCCACCCTGATCGACTTGATTATGCTGATCAGGTTCTGGGAGCATGTGTGGAACAACTCTCTGGCAAAGGGAAAATCGAGGACAACAAGGCAACAAAGCAGATTGTTGCTCTATTAAGTGCTCCACTAGAGAAATATAATGATGTTATGACTGCTTTGAAGCTTTCAAACTATCCCCGTGTACTGGAATATCTTGATGTTCCAACTAATAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGGAACACAGATTTCTACTTCAGACAAGGTTGAAGCATTGTTTGAGCTGATAAAGGGGCTTATCAAGGATTCTGATGGGATTCTTAATGATGAGGGGGATGAAGATGATTTCAAAGAAGAGCAGAATTCTGTTGCCCGTCTAATCCAGATGCTTTATAATGATGATCCAGAAGAGTTCCTTAAGATTATAGATACTGTGAGGAAGTACATATTGACTGGAGGACCAAAACGTCTACCTTTCACTGTTCCACCTCTTGTCTTTTCTTCTTTAAAGTTGGTTAGGCAGTTACGAGGTGGTCAAAATGAAAATCCATTTGGAGATGATGCATCATCAACACCAAAGAAAATTTATCAGCTTTTAAACCAGACTATCGAGACTCTAGCAGGTGTCCAAGCACCGGAATTAGCACTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTCTGATTTGGAGCCTGTTGCATATGAATTTTTCACCCAGGCTTATATTCTGTATGAAGAAGAAATTTCGGATTCCAGAGCACAGATCACGGCTCTCCATTTAATAATAGGAACTCTTCAAAGGATGCACATCTTCGGTGTTGAGAATAGGGATACTTTAACACACAAAGCCACTGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAGTGCAGAGCTGTCTATGCATGCTCACATATATTTTGGATAGATGATCGCGATAACATGAAAGATGGAGAGAGGGTCCTTTTATGCCTCAAGCGGGCTTTAAGAATTGCAAATGCTGCACAGCAAATGTCAAATGCAGCACGAGGTAACACTGGATCAGTTGTGCTCTTCATTGAGATATTGAACAAGTATCTTTACTTCTTTGAGAAGGGAATCCCAGAGGTCACGATTGCTTCTATCCAGAGCCTAATTGAGTTAATCACGAATGAAATGCAAAGTGAATGTGCAACTGCAGATCCAGCCGCGGATGCTTTCTTAGCTAGTACAATGCGATATATACACTTCCAGAAACAAAAAGGCGGCACAGTAGGTGAGAAGTATGAACCCATAAAGGTTTAA 2373 0.4155 MLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTIGSVYIKSKEAPAKDVLKDLVEMCRGIQNPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVVDAVEFVLQNFTEMNKLWVRMQHQGPARGKEKREKERNELRDLVGKNLHVLSQIEGVDLDMYKYVVLPRVLEQVVNCKDMLSQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTFGVVTLYSSLLKFTLHVHPDRLDYADQVLGACVEQLSGKGKIEDNKATKQIVALLSAPLEKYNDVMTALKLSNYPRVLEYLDVPTNKVMATVIIQSIMKNGTQISTSDKVEALFELIKGLIKDSDGILNDEGDEDDFKEEQNSVARLIQMLYNDDPEEFLKIIDTVRKYILTGGPKRLPFTVPPLVFSSLKLVRQLRGGQNENPFGDDASSTPKKIYQLLNQTIETLAGVQAPELALQLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQITALHLIIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHIFWIDDRDNMKDGERVLLCLKRALRIANAAQQMSNAARGNTGSVVLFIEILNKYLYFFEKGIPEVTIASIQSLIELITNEMQSECATADPAADAFLASTMRYIHFQKQKGGTVGEKYEPIKV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1479 790 PIRSF Retromer_Vps35 1 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Lal23g1479 790 Gene3D - 465 775 IPR042491 -
Lal23g1479 790 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 1 790 - -
Lal23g1479 790 SUPERFAMILY ARM repeat 323 746 IPR016024 -
Lal23g1479 790 Pfam Vacuolar protein sorting-associated protein 35 12 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Lal23g1479 790 PANTHER VACUOLAR SORTING PROTEIN 35 1 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1479 Lal-Chr23 15103721 15113582 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1479 K18468 - gmx:100811902 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1479 23 15103721 15113582 Lal23g1479 23 15103721 15113582 ECH
Lal16g0128 16 758396 767794 Lal23g1479 23 15103721 15113582 LSH