Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1419 ATGGTCTCCGCTAAGTTATCATCATGCGTTGCGGTGGCGGCGGCCGCCGTTGCTTCCGTCTCACCCCCCTCTGATACTGCACACGCCGCCGGCTTCCGTATCCCTTTCTTCTCTTCTTCACCTTCCCCTTCCGCGCCGGACCAGGCTTCCGACAATAAGACGGACCCTACTCCGTCCGATGAACCAAACAAGTCGGGTTTTGACCCGGAATCGTTGGAAAGAGCTGCCAAAGCTCTCCGTAAAATCAATAGTTCTCCATATGCCAAACAGGTGTTTGACGTAATGCGAAAGCAGGAGCAAACTCGTCTTGCTGAGTTAGATGCTGAGAAAATTCATTATGAACTTATTCAGTCCCAACAAGATATTGATAGGACGCGTAAAATTGCTGAAGAACAACGTAACCTAATACAAGAGCAAGCACAAAGACAGGCTCAGGTGCAGCGGTATGAAGATGAATTGGCAAGGAAAAGAATGCAGACGGATCATGAAGCTCAAAGGCATCATAATGTTGAATTGGTCAAGTTGCAAGAGGAGTCTTCTGTAAGAAAGGAGCAGGCAAGACGGGCTACTGAAGAACAGGTTCAGTCTCAGCAGCGTCAGACTGAGAGAGAGAGAGCTGAAATAGAAAGAGAAACCATTAGAGTTAAGGCAATGGCAGAGGCTGAGGCCCGAGCCCACGAAGCAAAATTGACTGAGGATCATAAAAGGAGAATGCTTTTCGAGCGAATGCAAGGTGAAAGAGATAAATGGCTTGCAGCAATTAACACAACTTTTAGTCATATCGAAGGTGGTTTAAGGGTCTTGTTGACAGATAGAGATAAATTGATTATGACTGTTGGAGGAGCTACTGCATTAGCTGCAGGAGTATATACAACTAGAGAAGGTGCTAAAGTTACATGGGGCTACATTAATCGGATTTTGGGGCAGCCATCATTGATCAGGGAATCATCAATGGCGAAGTTTCCAGGATCAAGGATCGTATCCGAAGCCACAAATAAAATTTTAAATTATAGCTCTTCGTCTAGGGTAGACACATCTGTCTTGAATCAAAATGGTCTTGGAAATGTAATCCTCCACCCGTTATTGAAGAAAAGAATAGAGCATCTTGCACGAGCAACATCAAATACCAAGGCCCATCAAGCACCATTCCGGAACATGCTTTTTTATGGGCCTCCTGGGACTGGCAAAACCATGGTTGCAAGGGAGATAGCTAGAAAATCGGGTTTGGATTATGCCATGATGACTGGAGGAGATGTTGCACCTCTTGGCCCACAAGCTGTTACCAAAATTCATGATATATTTGATTGGGCCAAGAAATCTAGAAAAGGGCTGTTGCTTTTTATTGACGAGGCAGATGCTTTCCTTTGCGAGCGTAACAGCATCCATATGAGCGAAGCTCAACGCAGTGCTCTAAATGCATTACTCTTCAGAACTGGTGATCAGTCTAGAGATATAGTACTTGTCCTTGCCACAAACAGACCAGGTGATCTTGATAGTGCAATTACTGATCGCATTGATGAAGCGATTGAATTTCCACTTCCAGGAGAGGAGGAACGACTAAAATTATTGAAGCTCTATTTGGATAAATATCTCCATGATGACAATAGTAGCTCCAAAGGAGTCTTCTTGCTGAAGAAGCAACCCCAGAAGATTACCATAAAAGATATATCTGAAGATGTTCTCGGAGAAGCTGCCAAGCAAACAGAGGGATTTTCTGGCCGTGAGATCGCCAAACTCATGGCCAGTGTCCAAGCTGCTGTGTATGGCCGCCCAGATTGCATCTTGGATTCCCAGTTGCTCAAAGAAATTGTAGATTACAAAGTGGTGGAACATCATCAACGATTAAAACTTGCAGCTGACGGTGGCTTGCCTGACCCAATGTAA 1884 0.449 MVSAKLSSCVAVAAAAVASVSPPSDTAHAAGFRIPFFSSSPSPSAPDQASDNKTDPTPSDEPNKSGFDPESLERAAKALRKINSSPYAKQVFDVMRKQEQTRLAELDAEKIHYELIQSQQDIDRTRKIAEEQRNLIQEQAQRQAQVQRYEDELARKRMQTDHEAQRHHNVELVKLQEESSVRKEQARRATEEQVQSQQRQTERERAEIERETIRVKAMAEAEARAHEAKLTEDHKRRMLFERMQGERDKWLAAINTTFSHIEGGLRVLLTDRDKLIMTVGGATALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGSRIVSEATNKILNYSSSSRVDTSVLNQNGLGNVILHPLLKKRIEHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGPQAVTKIHDIFDWAKKSRKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEAIEFPLPGEEERLKLLKLYLDKYLHDDNSSSKGVFLLKKQPQKITIKDISEDVLGEAAKQTEGFSGREIAKLMASVQAAVYGRPDCILDSQLLKEIVDYKVVEHHQRLKLAADGGLPDPM 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1419 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 609 IPR027417 -
Lal23g1419 627 Coils Coil 122 152 - -
Lal23g1419 627 MobiDBLite consensus disorder prediction 38 61 - -
Lal23g1419 627 Pfam ATPase family associated with various cellular activities (AAA) 386 513 IPR003959 GO:0005524|GO:0016887
Lal23g1419 627 CDD AAA 378 513 - -
Lal23g1419 627 MobiDBLite consensus disorder prediction 38 69 - -
Lal23g1419 627 Pfam ATPase family AAA domain-containing protein 3, N-terminal 50 314 IPR021911 -
Lal23g1419 627 Gene3D - 332 530 IPR027417 -
Lal23g1419 627 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 622 - -
Lal23g1419 627 MobiDBLite consensus disorder prediction 160 207 - -
Lal23g1419 627 SMART AAA_5 382 515 IPR003593 -
Lal23g1419 627 MobiDBLite consensus disorder prediction 160 190 - -
Lal23g1419 627 Coils Coil 172 211 - -
Lal23g1419 627 ProSitePatterns AAA-protein family signature. 485 504 IPR003960 GO:0005524|GO:0016887
Lal23g1419 627 PANTHER PUTATIVE ATP-ASE 1 622 IPR039188 GO:0005739|GO:0007005
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1419 Lal-Chr23 14705960 14711542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1419 362 589 Miscellaneous Gene Families AT5G53170 29.958 2.88e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1419 K17681 - gmx:100777755 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1419 23 14705960 14711542 Lal23g1419 23 14705960 14711542 ECH
Lal15g0123 15 863788 869986 Lal23g1419 23 14705960 14711542 LSH