Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1412 ATGGTACACAGCGCCTACGATCGCGTGGAATTAGTTACCGATTGCCCTTCCAAAATCGAAGCCATCGAATCCTACGGTTCCAAACTTCTCCTTGCTTGCACCGATGGATCCCTTCGTATCTACGCTCCACAATCTTCCAATTCCTCTTCCCTTTACTTCCTCGAAAACAACCTTGTTGGCTTCACCAAGAAACCTCTTATTTCCATTGAGGTTCTCGAATCCAGAGAACTCCTCTTATCTCTCTCTGAATCCATCGCTTTCCACAGACTCCCTACTTTTGAAACCATTGCTGTTATCACCAAAGCTAAGGGCGCTAACGTCTTTTCCTTCGACCATCGCAGAGGCTTCTTGTGCTTCGCTAGGCAAAAACGCGTTTGCATATTCAGACATGACGGTGGTAGAGGATTTGTGGAAGTGAAAGAGTTTGGTGTTCCAGATGTGGTGAAATCCATGTGTTGGTGCGGTGAGAATATATGTTTGGGGATTAGACGAGAGTATGTGATTTTGAATTCTTCAAACGGCACATTGTCTGAGGTGTTTACCTCTGGGAGACTAGCGCCGCCTTTGGTCATACCTCTTCCTTCTGGAGAGCTTCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGACCAAAATGGGAAGCTTCTTTCAGAAGGAAGGATTTGTTGGTCTGAGCCCCCCCTAGAAGTTGTAATTCAAAAGCCATATGCTATAGCTTTACTTCCCAGATTCGTGGAGATTCGGTCTCTCCGAGATCCATATCCTCTGATACAAACCGTTGTTCTTCGAAACGTTCACCATCTTTGCGAAAGCAATAATTCTGTGATACTTGCATTGGATAATTCTGTTCATGGCCTTATCCCTGTTTCTCTTGGAGCCCAGATTGTCCAATTAACAGCATCTGGCAACTTTGAAGAGGCATTGTCATTGTGCAAGCTCCTTCCACCTGAAGAGTCAAGCCTGCGTGTTGCGAAGGAGGAGTCAATTCATATAAGATATGCCCACTATCTTTTTGAGAACGGGAGCTATGAGGATGCAATGGAACATTTTCTAGATTCTCAAGTTGATATAACCTATGTACTTTCTCTGTATCCGTCCATTGTCCTTCCAAAAACAACTGTTGTTCATGAATCAGAGAAGTTGGACATTTATGGGGATGCTTCATATCACTCCAGAGGTTCTTCGGGTATGTCAGATGATATGGAACCCTTATCAACATCTCATACTTCAGAACCTGATGAGAATGCAGCACTTGAATCCAAAAAAGTGAGCCATAATATTCTTATGGCTCTCATAAAATATTTACAGAAGAGGAGATATAGTTTTATTGAGAAGGCCACTGCAGAAGGAACTGAAGAAGTTGTTCTAGATGCAGTTGGGGATAACTTTACATCTTACAATAGGTTCAAGAAAACAACCAAGTATCAAGGGCGTGGTCCTGTTAGTTCAGTAGCTCGGGAGATGGCTTCAATTTTGGATACTGCTCTACTTCAAGCATTGCTTTTTACTGGACAATCTTCATTGGTTTTAGAATTACTGAGAGGTCTTAACTACTGTGATTTTAAAATATGTGAAGAGATACTTCGAAAAGGCAACCATCATGTTGCTTCACTAGAACTCTACAAGTACAACTCGTTGCACCGGGAAGCACTTGAACTGCTTCATAAATTGGTGGAAGAGTCAAAGTCTAAGCCGGAGGACATTGTTGAGTATCTCAAGCCGCTGTGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCGATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGATCTCTTTCTGTCCGGAAATATTCCGGCAGATATGGTGAACTCATATTTGAAGCAGCACTCTCCTAACATGCAAGCTAAATATTTGGAGCTCATGCTTGCAATGCATGAGAATGCCATATCTGGCAATTTGCAAAATGAAATGGTAAACATATATCTTTCTGAAGTACTTGATTGGTACGCTGATTTAAGTGCTCAACAGAAATGGGATGAGAAAGCTTATTCCCCAACAAGGAAAAAATTATTGTTTGCCTTAGAGAGTATATCAGGATACAATCCAGAGGCTCTGCTTAAACGTCTTCCATCAGATGCTTTATATGAAGAACGTGCAATTCTTTTGGGGAAAATGAACCAACATGAACTTGCATTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAACTGGCATTGTCTTATTGTGATCGAGTATACGAGTCTAAGCCTCAGCCATCTGGAAAATATGCCAGCAACATATATCTTACACTTATGCAAATATACTTGAATCCTTTGAAGACGACCGCGAGCTTCGAAAAGAGAATTACAAACCTATTATCCCTACAGAATACAACCACTCCGAAAGTTGGCTCATCGATATCAGTAAAAACTAAAGCTGGCCGAGGAACAAAGAAAATTGCTGCAATAGAGGGTGCCGAGGAAACAAAAATTAGTTTGAGCAGCACAGACAGCAGCAGGAGTGATGGTGATGGTGATGGTGATGCAGATGCAGATGCAGATGAATTTAGTGAGGGTGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCTGCCGGTGGGATAGAATAAATGGAGCTCAAGCCCTTAAACTTCTACCAAGAGAGACCAAATTACAGGACCTACTTTCATTTATCGGACCCCTTCTGAGAAAATCTAGTGAATTGTACCGTAATTGCTCGGTGATCAAGAGCTTGAGACAGAGTGAGAACCTTCAGGTGAGAGATGAACTGTATAGCCAGAGGAAAGCAGTTGTGAAGATAACCGGTGATAGCATGTGTTCTTTATGCCGTAAGAAAATAGGGACAAGTGTTTTTGCTGTTTACCCCAATGGGACCACTCTGGTGCACTTTGTTTGTTTCAGAGATTCTCAAAACATGAAAGCTGTAGCCAAGGGATCTCAATTGAGGAAGCGATTATGA 2958 0.4212 MVHSAYDRVELVTDCPSKIEAIESYGSKLLLACTDGSLRIYAPQSSNSSSLYFLENNLVGFTKKPLISIEVLESRELLLSLSESIAFHRLPTFETIAVITKAKGANVFSFDHRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMCWCGENICLGIRREYVILNSSNGTLSEVFTSGRLAPPLVIPLPSGELLLGKENIGVFVDQNGKLLSEGRICWSEPPLEVVIQKPYAIALLPRFVEIRSLRDPYPLIQTVVLRNVHHLCESNNSVILALDNSVHGLIPVSLGAQIVQLTASGNFEEALSLCKLLPPEESSLRVAKEESIHIRYAHYLFENGSYEDAMEHFLDSQVDITYVLSLYPSIVLPKTTVVHESEKLDIYGDASYHSRGSSGMSDDMEPLSTSHTSEPDENAALESKKVSHNILMALIKYLQKRRYSFIEKATAEGTEEVVLDAVGDNFTSYNRFKKTTKYQGRGPVSSVAREMASILDTALLQALLFTGQSSLVLELLRGLNYCDFKICEEILRKGNHHVASLELYKYNSLHREALELLHKLVEESKSKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIDLFLSGNIPADMVNSYLKQHSPNMQAKYLELMLAMHENAISGNLQNEMVNIYLSEVLDWYADLSAQQKWDEKAYSPTRKKLLFALESISGYNPEALLKRLPSDALYEERAILLGKMNQHELALSLYVHKLHVPELALSYCDRVYESKPQPSGKYASNIYLTLMQIYLNPLKTTASFEKRITNLLSLQNTTTPKVGSSISVKTKAGRGTKKIAAIEGAEETKISLSSTDSSRSDGDGDGDADADADEFSEGGSTIMLDEVLDLLSCRWDRINGAQALKLLPRETKLQDLLSFIGPLLRKSSELYRNCSVIKSLRQSENLQVRDELYSQRKAVVKITGDSMCSLCRKKIGTSVFAVYPNGTTLVHFVCFRDSQNMKAVAKGSQLRKRL 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1412 985 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 586 770 IPR000547 GO:0006886|GO:0016192
Lal23g1412 985 ProSiteProfiles Citron homology (CNH) domain profile. 16 275 IPR001180 -
Lal23g1412 985 PANTHER CNH DOMAIN CONTAINING 1 984 IPR032914 GO:0016192
Lal23g1412 985 MobiDBLite consensus disorder prediction 391 417 - -
Lal23g1412 985 SUPERFAMILY WD40 repeat-like 25 174 IPR036322 GO:0005515
Lal23g1412 985 Pfam Vacuolar sorting protein 39 domain 1 492 591 IPR019452 -
Lal23g1412 985 MobiDBLite consensus disorder prediction 820 843 - -
Lal23g1412 985 Pfam Region in Clathrin and VPS 611 741 IPR000547 GO:0006886|GO:0016192
Lal23g1412 985 MobiDBLite consensus disorder prediction 391 413 - -
Lal23g1412 985 PANTHER VACUOLAR SORTING PROTEIN 39 1 984 - -
Lal23g1412 985 Pfam CNH domain 26 270 IPR001180 -
Lal23g1412 985 Pfam Vacuolar sorting protein 39 domain 2 859 967 IPR019453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1412 Lal-Chr23 14662227 14668827 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1412 K20183 - gmx:100805342 1606.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1412 23 14662227 14668827 Lal23g1412 23 14662227 14668827 ECH