Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1378 ATGTTGATGAATAAGAGGGCATTGTCTTGCAATTTTAACTTGCTCAAAAGATTAACCCAGCAACTCATACTTCAACCCCGTTTCTATGCCCGTGACCCCTTTCCCACCAAAGTATCTCACTATCTTCACCGTGCCAAACTCATCGATTCCATTCGTCTCACTCTCCGCTCAAACAACCCCAATACTTCACTTCCCACTCTCTTAAACCATCGCCTCCTCGACTCTTTTGTTGTCACTCACTCCCTTCGTTCTGCACCCTCTGCAGATTCCGCACTCTCTCTTACACAAGCCCTTGATAAAATTCCCCGCTTTTCGCATACCCAATTTACCCTCCATGCCCTCGCTACCGTGCTCGCCAAGTCTGGTCGAACTGCTGAGCTCAAGTCCCTCATTGATGATATCCGTGCCAAAAAATTCGGGAATGTAAAGATTACCTTTATGAATCTTATGCAGTGGTATGCTGCAGCTAAGGACATTGACTCTGTTATTGGGGTATTGGATGAGTATAGGCTTGACAGTAAGCATCCTTGCACTGAATCTTACAACATTGTTATGTCTCTATATGCACAAATGGGGAAGGACTCTGAGGTTGTTAAAGTTTTTCATAGTATGATAGATGAAGGGTCACTTCCGAATTGTAGAAGCTATACTATAATGATCGAGCACCTTGTGAAATCTGGAAAGTTGTTTGAAGCCATGGAGATTTTTAATGCGTTGCCTTTTATGCGGGTCAAACGTACTTTGAAGCAGTATTCGGTTCTGATCGAGAGTTTCATTGCAAGTAAACGGTTTGAAGAAGTGAAAATGTTGCTTAATGAAATGCAAGTTGATGGAGTATTGCCTAGTGGAGCCATGAGTTTATCACTGCAGCAAATGAAGAAGGAAGGATTTATTAGGGAGAGTGATGAATTCTTTAGAGAAACTACTTTACCAGATGAAAGGATCAAGAACATAAGATATGCAATTGACAGCAGTGATGATGAGGAAGAGGACGAGGATGAGAATGTAAGTCATTGTGATCGTGTTGATAGGATCCAGTTAAAACCGTGGCTGGATCCACGGGCTTTAGCTAATGCCTTGCAGAGTTGGAGTCCTGATGAGGTTGCAGAACTAGAGGGTGCAAAATTTGTGTGGACAACCAGGTTTGTCTGCAAGATTCTTCGAAACTTCAGTTCACCAGAGACTGCATGGAACTTCTTCTGTTGGGTTGCTAATCAACCTGGATTTACTCATGACATATACACAGTACAGAGAATCGTGGCCCTTCTAGCACGCCATGGACGCACAGAATTGGTTGATAGACTTATCTCCAAGATCAGAACGGAGGGAATGAGAGTGCCATTCAGCACCATTAGGCTAATCATTGACTTTTATGGGATTTCAAAAAACGCCGATGCTGCACTGAAGGTTTTCAATCATGATCGAATGCTTTGTGGTCCTATATCAAAATCTAATCTGATGCTTTTGTATTCATCTCTCCTTAGAACATTAACCAAGTGTGGAAGGAATTCTGATGCCTTGGATATGCTTGATGAGATGATTTTAAATGGTATTTGCCCAGATATCCAAACATTTTCGGGTCTAATGCACTATTTTTCGCAACTCGGAGACATAAAAACAGTGCAAAAACTCTTTGCAATGCTTAGGCAGAGTGGTCTAGAGCCAGACCCTTATCTGTACAAGGTACTAATCCAAGGTTATTGCAAATCGAAAAGAGCTGCATTAGCATGGAGACTATTTGAAGACATGAAGAATTCAGGTCTGGTGCCTGATTCCGCCACCAAAGAGTTGCTAGTGAAGAGCCTGTGGAAAGAAGGGCGGCGAAGAGAGGCTGCAGCTGTGGAAGAGAGTTATGATGATCTAAATGTGGTGCTTCCACTTGAACTGCCTGGTCATGTATGGACTGTCAGCTCTGCCGATCTCACAAGAGTTTATAATATTTATTCAAATTGTCTTGCTTCAAATGGTGGTTAG 1974 0.4255 MLMNKRALSCNFNLLKRLTQQLILQPRFYARDPFPTKVSHYLHRAKLIDSIRLTLRSNNPNTSLPTLLNHRLLDSFVVTHSLRSAPSADSALSLTQALDKIPRFSHTQFTLHALATVLAKSGRTAELKSLIDDIRAKKFGNVKITFMNLMQWYAAAKDIDSVIGVLDEYRLDSKHPCTESYNIVMSLYAQMGKDSEVVKVFHSMIDEGSLPNCRSYTIMIEHLVKSGKLFEAMEIFNALPFMRVKRTLKQYSVLIESFIASKRFEEVKMLLNEMQVDGVLPSGAMSLSLQQMKKEGFIRESDEFFRETTLPDERIKNIRYAIDSSDDEEEDEDENVSHCDRVDRIQLKPWLDPRALANALQSWSPDEVAELEGAKFVWTTRFVCKILRNFSSPETAWNFFCWVANQPGFTHDIYTVQRIVALLARHGRTELVDRLISKIRTEGMRVPFSTIRLIIDFYGISKNADAALKVFNHDRMLCGPISKSNLMLLYSSLLRTLTKCGRNSDALDMLDEMILNGICPDIQTFSGLMHYFSQLGDIKTVQKLFAMLRQSGLEPDPYLYKVLIQGYCKSKRAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESYDDLNVVLPLELPGHVWTVSSADLTRVYNIYSNCLASNGG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1378 657 Pfam PPR repeat family 560 602 IPR002885 -
Lal23g1378 657 Pfam PPR repeat family 176 224 IPR002885 -
Lal23g1378 657 Gene3D Tetratricopeptide repeat domain 486 626 IPR011990 GO:0005515
Lal23g1378 657 Gene3D Tetratricopeptide repeat domain 357 485 IPR011990 GO:0005515
Lal23g1378 657 PANTHER OS01G0167750 PROTEIN 15 654 IPR044175 -
Lal23g1378 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lal23g1378 657 Pfam PPR repeat 490 518 IPR002885 -
Lal23g1378 657 Pfam PPR repeat 251 279 IPR002885 -
Lal23g1378 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Lal23g1378 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Lal23g1378 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Lal23g1378 657 TIGRFAM PPR: pentatricopeptide repeat domain 490 522 IPR002885 -
Lal23g1378 657 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Lal23g1378 657 TIGRFAM PPR: pentatricopeptide repeat domain 251 282 IPR002885 -
Lal23g1378 657 TIGRFAM PPR: pentatricopeptide repeat domain 180 213 IPR002885 -
Lal23g1378 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Lal23g1378 657 Gene3D Tetratricopeptide repeat domain 79 328 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1378 410 656 Glycosyltransferase AT1G05670 24.696 5.00e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1378 - - gmx:100779372 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1378 23 14467424 14469397 Lal23g1378 23 14467424 14469397 ECH