Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1256 ATGTCTCTAACACTTCGTTCCTCCATTTCTTTCATTAATCAGAATCAAACCAAAGTCCTAAAACCTTCTGATGATTTTCTTTCCAAAGTTACCTTTCCAAAAATGAATCCATCTTGGTGTCTAAGAGCAAAGAGTTCCATGCAAGAACCACATGTCACACGGGACAACAACAACAATAACAATAACTTCAACTCTGAAGTTAAATGGGAAAATGAAAAGGTTCATGCTCCATCTATTGCTAATAACCATGGTGATTCAATGAGAGTGCCCGTGTTTGTGATGCTACCATTAGATACTGTAACAATGGGAGGAAGCTTGAATAGGCCAAGAGCAATGAATGCTAGTTTGATGGCACTGAAGAGTGCAGGAGTTGAAGGAGTAATGGTTGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGTCCTTTGAAGTATAACTGGGAAGCATATGCTGAACTTGTGCAAATGGTACAAAAGCATGGATTGAAGCTTCAGGTTGTTATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTGCCCCCATGGGTTGTGGAAGAAATCAACAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAAGAGGAATCCTGAGTACATCTCCTTAGGATGTGATTCAGTGCCAGTTCTAAGTGGAAGGACTCCACTCCAGGTGTATTCTGATTACATGAGGAGCTTCCATGACAGATTCAGAGATTATTTGGGCAATGTTATCACAGAAATCCAAGTGGGGTTAGGTCCTTGTGGAGAACTGAGGTACCCATCTTATCCAGAAAGCAATGGTTGGAGATTTCCCGGAATTGGAGAATTCCAATGCTATGATAAGTATATGAGAGCTTCTTTGGAAGCATCAGCTGAGGCCATTGGGAAGAAAGAATGGGGAAGAGGTGGACCCCATGACTCAGGTGAGTACAATCAATTTCCTGAGGATACTGGATTTTTCAAAAGGGAAGGAACATGGAACACAGAATATGGACACTTCTTCCTTAACTGGTATTCAAGCAAACTAGTGGAACATGGTGAGAGGATCCTTATATCTGCCAAAACCATATTCCAAACATCAAGAGTGAAACTATCTGCCAAAATAGCTGGAATCCATTGGCATTACAAAGCAAGGTCTCATGCAACTGAACTAACTGCTGGCTACTATAACACAAGATTCCATGATGGTTATCAACCAATAGCACAAATGCTAGCAAAACATGGAGTTGTGTTCAATTTCACATGCATGGAAATGAAAGACAAAGAGCAACCTGGGCATGCTAATTGTTCACCTGAAGGGTTAGTTCAACAAGTTAAGATGGCAACCAAGAAAGCAGGAGTAGAACTTGCAGGTGAAAATGCATTAGAGAGATATGATGAAAGTGCATATGCTCAAGTTTTGTCAACAAGTAGGTGTGATTCTGGTCATGGGTTGAGTGCATTTACTTATCTTAGAATGAATAAGAGATTGTTTGAGGGTGAGAATTGGAGGCACCTAGTGGAATTTGTAAAGAGCATGTCTGAAGGTGGTAGGAGACAAAGGCTCTCAGATTCTGATTCCTGTGGAACTGATCTTTATGTTGGCCACATCAAAGGAACAAAAAAGCAAGATCAAGAGGTTACACTTGTGTGA 1650 0.4133 MSLTLRSSISFINQNQTKVLKPSDDFLSKVTFPKMNPSWCLRAKSSMQEPHVTRDNNNNNNNFNSEVKWENEKVHAPSIANNHGDSMRVPVFVMLPLDTVTMGGSLNRPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVVEEINKNPDLVYTDRSGKRNPEYISLGCDSVPVLSGRTPLQVYSDYMRSFHDRFRDYLGNVITEIQVGLGPCGELRYPSYPESNGWRFPGIGEFQCYDKYMRASLEASAEAIGKKEWGRGGPHDSGEYNQFPEDTGFFKREGTWNTEYGHFFLNWYSSKLVEHGERILISAKTIFQTSRVKLSAKIAGIHWHYKARSHATELTAGYYNTRFHDGYQPIAQMLAKHGVVFNFTCMEMKDKEQPGHANCSPEGLVQQVKMATKKAGVELAGENALERYDESAYAQVLSTSRCDSGHGLSAFTYLRMNKRLFEGENWRHLVEFVKSMSEGGRRQRLSDSDSCGTDLYVGHIKGTKKQDQEVTLV 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1256 549 PANTHER - 1 546 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 Pfam Glycosyl hydrolase family 14 92 508 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 123 137 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 144 162 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 166 187 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 258 280 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 351 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 368 384 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 385 396 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 426 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 440 462 IPR001554 GO:0000272|GO:0016161
Lal23g1256 549 Gene3D Glycosidases 82 545 - -
Lal23g1256 549 PANTHER BETA-AMYLASE 1 546 - -
Lal23g1256 549 ProSitePatterns Beta-amylase active site 1. 170 178 IPR018238 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Plant beta-amylase signature 248 257 IPR001371 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Plant beta-amylase signature 406 416 IPR001371 GO:0000272|GO:0016161
Lal23g1256 549 PRINTS Plant beta-amylase signature 488 502 IPR001371 GO:0000272|GO:0016161
Lal23g1256 549 SUPERFAMILY (Trans)glycosidases 88 515 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1256 Lal-Chr23 13672819 13675443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1256 1 549 Glycoside Hydrolase AT4G17090 69.565 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1256 K01177 - gmx:100784912 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1256 23 13672819 13675443 Lal23g1256 23 13672819 13675443 ECH