Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1214 ATGGGTAAGGATCTGAGCGATGACCAAGTTTCTTCAATGAAGGAAGCTTTCACTCTCTTCGACACCGACGGTGACGGTAAGATCGCTCCATCGGAGCTCGGAATCCTTATGCGTTCTCTCGGAGGCAACCCGACCCAGGCCCAACTCAAAGCCATCGTTGCGGAAGAGAATCTCACTGCACCCTTCGATTTCCCCCGATTCCTAGATCTGATGGCGAAGCACATGAAACTTGAGCCGTTTGATCGTCAGCTCCGTGATGCATTCAAAGTTCTGGACAAGGAATCAACCGGTCTCGTCTCCGTGACGGAACTCCGTCACATCCTCACCAGTATTGGTGAGAAGCTCGAGCCTGCTGAGTTCGATGAGTGGATCAGGGAAGTCGATGTTGGCTCCGATGGCAAGATCCGTTACGAGGATTTCATCTCCCGAATGAGAGGGCCATTTTATTGTTGTGCTGATTTGAATAACTTGTGGAAGCTCTTAGCTGCTGTTGTGAGATCGCCTGTTAGTACTTGTCCATACTTTTGA 528 0.5019 MGKDLSDDQVSSMKEAFTLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKAIVAEENLTAPFDFPRFLDLMAKHMKLEPFDRQLRDAFKVLDKESTGLVSVTELRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFISRMRGPFYCCADLNNLWKLLAAVVRSPVSTCPYF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1214 175 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Lal23g1214 175 PANTHER CALCIUM BINDING PROTEIN 1 145 - -
Lal23g1214 175 Gene3D - 81 144 - -
Lal23g1214 175 CDD EFh 14 55 IPR002048 GO:0005509
Lal23g1214 175 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Lal23g1214 175 Pfam EF-hand domain pair 82 145 IPR002048 GO:0005509
Lal23g1214 175 CDD EFh 83 145 IPR002048 GO:0005509
Lal23g1214 175 Gene3D - 3 79 - -
Lal23g1214 175 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Lal23g1214 175 SUPERFAMILY EF-hand 5 144 IPR011992 -
Lal23g1214 175 PANTHER CALCIUM-BINDING PROTEIN CML13-RELATED 1 145 - -
Lal23g1214 175 SMART efh_1 12 40 IPR002048 GO:0005509
Lal23g1214 175 SMART efh_1 83 111 IPR002048 GO:0005509
Lal23g1214 175 SMART efh_1 119 147 IPR002048 GO:0005509
Lal23g1214 175 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1214 Lal-Chr23 13410744 13413363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1214 1 144 EF-hand Containing Proteins AT1G12310 87.586 4.79e-91 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1214 K13448 - tcc:18606356 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1214 23 13410744 13413363 Lal23g1214 23 13410744 13413363 ECH