Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1207 ATGTCATCTACGTCTAAATTAAACAATAAAACTAACCACCCTGCTACGGTTCCTCCACCAGCACAACCTCAAAAATGGCCTGCTGGCATGCTGAAAATGGATATGCTGATTTCAGAGCTAAGTGTCCAAGGAAGACTAGCCCTTCCAATGGTTGTGATGAACTTGGCTTGGTTTGGTAAGGCAGCAATCACAACAGCTTTTTTGGGACGCCTAGGAGAGCTTAGCTTAGCCGGCGGCGCCATCGGGTTCATGTTTGCTAATGTCACCGGTTTCTCTGTCTTGAATGGTCTATGTGGTGCTATGGAAGCTATATGTGGACAAGCTCAAGGTGCTCAAAATTTCAAGCTCCTTCACAAAACCCTTCTCATGACAATCTTATTGTTACTATTGGTATCACTTCCTGTTACCTTTTTGTGGCTTAATGTTGACAAAATTTTGATTAGGTTTGGCCAACAAGAAGATATCTCAAGTGTGGCCAAGACCTATGTTTCATATCTCATACCTGACTTGTTTATCACTTCATTCTTCTGTCCTTTAAAAGCTTACTTGAGTTCTCAAAGCATAACTCTTCCTACTATGTTTATCTCTGCTGCAGCATTAGCTTTCCACATACCAATTAACATAGTGCTCTCAAAGACCATGGGACTAATAGGAGTTTCCATGGCTGTTTGGATAACAGATCTTATAATTGTGGTTCTGTTGGCCATTTATGTTGTGATTCTTGAGAACACAAAGGGAAATAGGTGGAAGGATGGAGGATGGTGGGATCAGAGTTTTATGGATTGGATTAGGTTGGTCAAGCTTGGTGGATCATGCTCCCTCAACACATGCCTTGAGTGGTGGTGCTATGAGATTCTAGTCTTGCTTACAGGCCACTTGAAAAATGCAAAGGAAGCTGTAGGAGTTTTGGCCATTGTGCTAAACTTGGACTATTTGTTTTTCTCAGTGATGCTATCACTTGGAACTTGTGTCTCCACTCGTGTCTCGAATGAGCTTGGAGCCAATCAAGCGGGCAATGCATATCGATCCGCATTCGTGTCGCTGGCCTTGGGATTTATCTTAGGTTGGATAGGCAGCTTATTGATGGTGGCTGTTAGGGGGAGTTGGGCGGCGCTATTTAGCCATGACAATGGAATTATAAAGGGTGTAAAGAAAACAATGTTGCTGATGGCTCTGACTGAAGTGTTTAATTTTCCATTGGCAGTTTGTGGGGGCATAGTACGAGGTACAGCTAGGCCCTGGTTAGGCATGTATTCTAATCTTGGTGGATTTTATTTCTTGGCCCTGCCACTAGGTGTGATTTTGGCCTTCAAGTTTCATCATGGCCTTGTTGGATTCTTCATTGGACTTAATGCAGGTATTGTTATCTGCTTGATGATGGATTTGGTGTTTATTGTGAGGTTAAACTGGGTGAAAGAAGCTTCCAAGGCACAAACACTTGTTAGTGATCACCAGGTTCAGAATGTTCCCAAATATGATGCAGAGGAACTAAGTACGGTCCAAGCAAATCATGAAGTTTAG 1521 0.428 MSSTSKLNNKTNHPATVPPPAQPQKWPAGMLKMDMLISELSVQGRLALPMVVMNLAWFGKAAITTAFLGRLGELSLAGGAIGFMFANVTGFSVLNGLCGAMEAICGQAQGAQNFKLLHKTLLMTILLLLLVSLPVTFLWLNVDKILIRFGQQEDISSVAKTYVSYLIPDLFITSFFCPLKAYLSSQSITLPTMFISAAALAFHIPINIVLSKTMGLIGVSMAVWITDLIIVVLLAIYVVILENTKGNRWKDGGWWDQSFMDWIRLVKLGGSCSLNTCLEWWCYEILVLLTGHLKNAKEAVGVLAIVLNLDYLFFSVMLSLGTCVSTRVSNELGANQAGNAYRSAFVSLALGFILGWIGSLLMVAVRGSWAALFSHDNGIIKGVKKTMLLMALTEVFNFPLAVCGGIVRGTARPWLGMYSNLGGFYFLALPLGVILAFKFHHGLVGFFIGLNAGIVICLMMDLVFIVRLNWVKEASKAQTLVSDHQVQNVPKYDAEELSTVQANHEV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1207 506 CDD MATE_eukaryotic 39 476 IPR045069 GO:0042910|GO:1990961
Lal23g1207 506 Pfam MatE 273 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal23g1207 506 Pfam MatE 49 208 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal23g1207 506 PANTHER PROTEIN DETOXIFICATION 56 29 486 - -
Lal23g1207 506 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 486 - -
Lal23g1207 506 TIGRFAM matE: MATE efflux family protein 49 446 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal23g1207 506 MobiDBLite consensus disorder prediction 1 15 - -
Lal23g1207 506 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1207 Lal-Chr23 13364664 13366184 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1207 K03327 - gmx:100804083 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1207 23 13364664 13366184 Lal23g1207 23 13364664 13366184 ECH