Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1179 ATGCAACTCATCGTTGCTCCGCCGCCAACACCACCCACTCGCTATCGATTATTTGATGATACCTTTGATCTAAAGACCACCACCACCACCACCTCCTCCTCCTCCGTTACTTCTTCTCCCAACCATCACCAACTTCACCTTCAACTACCCCTCCGCAACCCTATACACAACAACCCTTCTCTTTTACCCAAATTCCCTTATAACCCTTCTCCTATTCCTCCTCAAATCACTCCTCGCAATAATTGCATTAAAAAGGAGTCAAAAGAGGCTTCAACGTTAGACATCTTGCACTTACTTGATGCTCTCTCATTTCCCATACCCATTGACACTTACATTTCTTTGATTAAAGAGTGCACTGTTTCTAAGGACCCACAAACTGCAATTGAGTTGCTCAACCACATCACATGTAGTGGCTGCAAACCCACTCTGCCATTGCTCAATCGGATTCTCATCATGTTTGTTTCATGTGGTCTTTTGGACAATGCTCGCCACCTGTTTGACAAAATGGCTGTGAGGGACTTCAACACTTGGGCAACCTTGTTCGTTGCTTATTTTGATGATGTTGATTATGAAGAGGCTACAAGTGTGTTTATTAGCATGATAGAAGATTTGGGTATGTCAGAATTTCCTCCATGGATATGGGATTGTCTTCTAAAGGCGTGTGCTTGCAGTATGAATTTCGCATTAGGATTGCAAGTTCATGGATGGTTGTTAAAGTTGGGAAATTGTGATGATACGGTTACTAGTACCTCCTTGATCAAATTTTATGGGAGATTCAGATGTATACAGGATGTGAACCTTGTATTTAATCAAGTGTCTCGGCATAATACCATGACTTGGACGGAAAAAATTGTGAGTGGTTGCAAGGAAAAGCAGTTCTCTGGAGTTCTTTGGGACTTCAAAGAGATGGGAAGGGAAGGGATAAAGAAGGACACCTTTACTTTTTCTAGTGTTCTTAAGGCATGTGGAAAGATGCATGATCATGGACGCTGCGGTGAGCAGGTCCATGCCGATGCCATCAAACTTGGGTTAGTAGAGGATAACTATGTGCATTGTAGTTTGATAGCCATGTATGGAAGAAGTGGGTTGCTGAATGACGCGAAACAGGTGTTTGAGATGACACAGGATGAAGGAAATGATGATTGTTGGAATGCCATGCTTATGGGTTACATATATAATGGTTTGCATATTGAAGCTGTTAAGTTTCTGTACCAGATGAAGGAAGCTGGAATACAGCCCCAAGAATCCTTGCTCAACAAACTGAGAATTTCTTGTGGCAGTATTACCTTCTGA 1293 0.4238 MQLIVAPPPTPPTRYRLFDDTFDLKTTTTTTSSSSVTSSPNHHQLHLQLPLRNPIHNNPSLLPKFPYNPSPIPPQITPRNNCIKKESKEASTLDILHLLDALSFPIPIDTYISLIKECTVSKDPQTAIELLNHITCSGCKPTLPLLNRILIMFVSCGLLDNARHLFDKMAVRDFNTWATLFVAYFDDVDYEEATSVFISMIEDLGMSEFPPWIWDCLLKACACSMNFALGLQVHGWLLKLGNCDDTVTSTSLIKFYGRFRCIQDVNLVFNQVSRHNTMTWTEKIVSGCKEKQFSGVLWDFKEMGREGIKKDTFTFSSVLKACGKMHDHGRCGEQVHADAIKLGLVEDNYVHCSLIAMYGRSGLLNDAKQVFEMTQDEGNDDCWNAMLMGYIYNGLHIEAVKFLYQMKEAGIQPQESLLNKLRISCGSITF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1179 430 Gene3D Tetratricopeptide repeat domain 208 328 IPR011990 GO:0005515
Lal23g1179 430 Gene3D Tetratricopeptide repeat domain 81 207 IPR011990 GO:0005515
Lal23g1179 430 PANTHER PPR REPEAT PROTEIN 77 427 - -
Lal23g1179 430 TIGRFAM PPR: pentatricopeptide repeat domain 382 413 IPR002885 -
Lal23g1179 430 PANTHER OS07G0578800 PROTEIN-RELATED 77 427 IPR045215 GO:0003723|GO:0009451
Lal23g1179 430 Pfam Pentatricopeptide repeat domain 100 154 IPR002885 -
Lal23g1179 430 Pfam PPR repeat 352 378 IPR002885 -
Lal23g1179 430 Pfam PPR repeat 382 411 IPR002885 -
Lal23g1179 430 Gene3D Tetratricopeptide repeat domain 330 427 IPR011990 GO:0005515
Lal23g1179 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1179 Lal-Chr23 13167036 13168328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1179 303 430 Glycoside Hydrolase AT3G49170 34.351 1.04e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1179 - K08726 lang:109330610 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1179 23 13167036 13168328 Lal23g1179 23 13167036 13168328 ECH