LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1140	ATGGATCAAAATAGGGGAGAGAGTTGGAGGGTCCCTGATGATTCTTCTAATCTTGACTACTCCATAGCTTTGGAATATGAGGGTCCAAAATTACCATATGAAGTACCAAGAGTTGAACCACTTGATGTAAACTCAAGGGTGATTCCCACTGCTGAACCACTGTCTGAATCACAAAGATCGGTTGCTTGTGTGAGGGGTCCTATGGTGATTGAACCAATCCCTCTTCCGGTGTCTCGAATTGCCGGTGTCACAAGTTCTCCTAATCATAGTCCAAGGTTGTCAGGAAGTTCAGAATCTGTGGTGTCTGTCTTACAAAACCATGATCTTTCTTCTGCTTCGGCTTCGCCTGCTTCGGTTCATAATCCTACAAGTAATCCTCCTAGGCAAGAAACAAGGAGGTCGCCCGTTGTCACTTTTAATACTAATGTTGAAAGGTCTCTGACAAAAGAGATGGAGGTTGTGAAGCCAGTTTATCCGGAATATGTTGGGGTTGTGAAGGAAAAGAAGAAAAAGAAAACAAGAGTTTGTTATAGATGTGGGAAAGGGAAGTGGGAAACTAAGGAGTCTTGCTTTGTTTGTAATGCCAAGTATTGCAGCAATTGCGTGCTCAGGGCAATGGGATCAATGCCTGAGGGGCGCAAATGTGTTACATGCATTGGTCAGCCGATCGATGAATCAAAGCGTTTGAAATTAGGTAAACATTCGAGGGTATTGTCGCGATTGTTAAGTCCTCTAGAAGTCAAACAAATTATGAAAGCGGAGAAGGAATGTCTGGCAAATCAGCTTCGGCCAGAGCAGCTGGTTGTCAATGGTTTGCCCCTTAAGGCTGACGAGATGGCAGAATTACTTGGATGCCCCTTACCTCCGCGGAAGTTAAAGCCTGGTAGATATTGGTATGACAAAGAATCTGGTCTCTGGGGAAAGGGAGGTGAAAAGCCTGACCGGATCATAAGTTCAAACTTGAATTTCACTGGGAAGCTTAGCCTTGATGCAAGTAATGGAAACACTGAGGTTTACATGAATGGTCGAGAGATTACCAAACTTGAATTGAGGGTACTGAAGCTGGCAAACGTGCAGTGTCCACGCGATACACACTTTTGGGTTTATGATGATGGTCGATATGAAGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGAGAAGGCATCTACAAGAATCGTCTGTACCCTGTTCTCCCTACCCTTTCCTCATGGACAGCCTCATGGGCAAAGAGATGAAACCAGTAATTATACTACAGTTCCTAATTACCTGGAACAGAAAAAAATCCAGAAGCTCCTTCTTCTGGGACTTCAAGGATCTGGAACTAGCACTATATTTAAGCAGGCTAAGTTTATGTATGGGAATACGTTTACTGTTGAAGAGCTGCAGGATGTGAAATTGATGATCCAGAGTAATGTGTACAAATATCTTAGCATTTTACTTGATGGAAGAGAGCGCTTTGAGGAAGAAGCTGTCTCTAGAATGCATGGACAAAGTTCTCCAGGTCAAAGTATGGAAGCAGGTAGCGATGTTGAAACATGTAACAATGGTGAATGCATCTATTCCCTCAACCCAAGGCTAAAGCATTTCTCTGACTGGCTGTTGGATATTATAGCCACTGGGGATCTAGATGCATTCTTTCCTGCAGCCACACGTGAATATGCACCATTAGTTGAAGAAGTGTGGAAGGATCCTGCAATACAAGAAACCTTCAAAAGAAAAGACGAGCTTCACTTTCTTCCAGAAGTCGCAGAGTACTTCTTAAGCAGGGCTGTTGAGATATCTAGCAATGAATATGAACCTTCTGAAAGAGACATAGTCTATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCGTTCATGGAATTCTCACTTGATGACCGTTGCCCAAAGTTTGAATTCACAGATAACCTGGATGCTCAGCCACCTCAGATCAAATACCAACTCATAAGGGTTAATGCGAAGGGCATGAATGAGGGATGCAAGTGGGTTGAAATGTTTGAAGATGTTAGAGCAGTGATTTTTTGTGTTTCCCTAAGTGACTTTGATCAGTTGTGGCTTGCCCCAGACAGCAGTGGTAGTGGAACACTTCTTCAAAACAAGATGATACAAAGCAAGGAGCTTTTTGAGACCATGATCAGGCACCCTTGTTTCAAAGATACCCCTTTTGTCCTGATCCTTAATAAATATGATACCTTTGAGGAAAAGATTAGTAGGGTATCCCTTAATGTTTGTGAATGGTTCAATGATTTTTGTCCTCTGAGGGCACAACACAATAACCAATCACTGGCCCATCAAGCTTATTTCTATGTTGCAATGAAATTCAAGGAGCTTTATGCTTCTATCACGGGTAGAAAACTTTTTGTGTCACAAGCCAGGGCAAGGGACCGTGTTACTGTTGATGAAGCATTCAAGTACATAAAAGAGGTTCTCAAGTGGGATGAGGAAAAGGAAGATAATTACTATGGTCCACCTGAGGATTCATTTTACAGTACAGACATAAGCTCTTCTCCCTATGTTAGACAAGAGTAA	2535	0.426	MDQNRGESWRVPDDSSNLDYSIALEYEGPKLPYEVPRVEPLDVNSRVIPTAEPLSESQRSVACVRGPMVIEPIPLPVSRIAGVTSSPNHSPRLSGSSESVVSVLQNHDLSSASASPASVHNPTSNPPRQETRRSPVVTFNTNVERSLTKEMEVVKPVYPEYVGVVKEKKKKKTRVCYRCGKGKWETKESCFVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDESKRLKLGKHSRVLSRLLSPLEVKQIMKAEKECLANQLRPEQLVVNGLPLKADEMAELLGCPLPPRKLKPGRYWYDKESGLWGKGGEKPDRIISSNLNFTGKLSLDASNGNTEVYMNGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRIVCTLFSLPFPHGQPHGQRDETSNYTTVPNYLEQKKIQKLLLLGLQGSGTSTIFKQAKFMYGNTFTVEELQDVKLMIQSNVYKYLSILLDGRERFEEEAVSRMHGQSSPGQSMEAGSDVETCNNGECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPEVAEYFLSRAVEISSNEYEPSERDIVYAEGVTQGNGLAFMEFSLDDRCPKFEFTDNLDAQPPQIKYQLIRVNAKGMNEGCKWVEMFEDVRAVIFCVSLSDFDQLWLAPDSSGSGTLLQNKMIQSKELFETMIRHPCFKDTPFVLILNKYDTFEEKISRVSLNVCEWFNDFCPLRAQHNNQSLAHQAYFYVAMKFKELYASITGRKLFVSQARARDRVTVDEAFKYIKEVLKWDEEKEDNYYGPPEDSFYSTDISSSPYVRQE	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1140	844	SUPERFAMILY	FYVE/PHD zinc finger	153	219	IPR011011	-
	Lal23g1140	844	SMART	galpha_1	412	801	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	MobiDBLite	consensus disorder prediction	819	844	-	-
	Lal23g1140	844	ProSiteProfiles	G-alpha domain profile.	429	823	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	Pfam	G-protein alpha subunit	426	811	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	Gene3D	-	625	820	IPR027417	-
	Lal23g1140	844	PANTHER	GTP-BINDING PROTEIN ALPHA SUBUNIT	11	840	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	MobiDBLite	consensus disorder prediction	110	135	-	-
	Lal23g1140	844	CDD	G-alpha	444	815	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	PRINTS	Alpha G protein (transducin) signature	432	447	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	PRINTS	Alpha G protein (transducin) signature	600	622	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	PRINTS	Alpha G protein (transducin) signature	671	699	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	PRINTS	Alpha G protein (transducin) signature	724	733	IPR001019	GO:0003924\|GO:0007186\|GO:0019001\|GO:0031683
	Lal23g1140	844	PANTHER	EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3	11	840	-	-
	Lal23g1140	844	SUPERFAMILY	Transducin (alpha subunit), insertion domain	458	610	IPR011025	GO:0007165
	Lal23g1140	844	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	428	814	IPR027417	-
	Lal23g1140	844	MobiDBLite	consensus disorder prediction	830	844	-	-
	Lal23g1140	844	Gene3D	-	460	611	IPR011025	GO:0007165
	Lal23g1140	844	MobiDBLite	consensus disorder prediction	82	101	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1140	Lal-Chr23	12886817	12893197	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1140	-		-	gmx:100794534	1434.08

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal23g1140	23	12886817	12893197	Lal23g1140	23	12886817	12893197	ECH