Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1086 ATGTCTCTCTCCACCACCTTCCTTAACCCAAACATGCATTCTTTCCTTCCATATCACAAAACTCTTAGTCCAAATCATGGTTACATTAAACAGTTCTGTGTGAGAGCTTCAGCAAGTAACTCTGAAGATGGAGAAAGGACAATTATAAAGAAAGAGAAAGATGGGTGGAACATCAAATTCTCAAGCAAGAAACCAGAAACTCCATTGCTAGATACAATCAATTACCCACTTCATATGAAGAATCTATCCATACAGGATCTGGAACAACTTGCTGCAGAGTTAAGGTCAGATATAGTACATACAGTGTCAAATATTGGTGGACATCTTAGCTCAAATTTGGGAGTAGTGGAATTATCAGTAGCATTACATCATGTTTTCAACACCCCAGAAGACAAGATCATATGGGATGTTGGACATCAGGCATACCCACACAAGATTCTCACAGGTAGAAGGTCTAGAATGCACACCATTAGGAAAACTTCAGGGCTAGCTGGCTTTCCTAAAAGAGATGAGAGTGTGCATGATGCTTTTGGAGCAGGGCATAGTTCTACAAGTATATCTGCTGGTCTTGACATAAAAAAAGTGGAAAGTAACTCTGGCTGCTCTTTTGTTCTTGTGGCTGCAAAAATGGTAGGAATGGCAGTTGCAAGGGATCTATTGGGAAAGAACAACAGCGTCATCTCGGTCATTGGAGATGGGGCAATGACTGCAGGTCAAGCTTATGAAGCCATGAATAATGCTGGATTCCTTGATGCTAACTTGATAATTATACTTAATGATAACAAGCAAGTGTCTTTGCCAACTGCTACACTTGATGGTCCTGCAACTCCGGTTGGAGCGCTTAGTAGAAATTTAAGCAAAATTCAAGCAAGCACCAAATTTCGCAAACTTAGAGAAGCTGCTAAAACAGTCACAAAGCAAATAGGAGGACAAGCACACCAAGTTGCAGCTAAGGTAGATGAATATGGAAGAGGTATGATCAATGGTTCTGGTTCTACATTTTTTGAGGAGCTTGGCTTATACTACATTGGACCTGTGGATGGTCACAACATTGAAGATTTGGTCCACATTTTTGAAAATGTGAAAGCGATGCCTGCCCCAGGTCCCATTTTGATTCATGTTGTGACAGAGAAGGGGAAGGGATACCCCCCAGCAGAAGCAGCTGCTGATAAAATGCATGGTGTTGTCAAGTTTGACCCACCATCTGGCCATCAGTTTAAGCAAAAATCTTCTAGACTTACATACACCCAGTACTTTGCTGAATCTTTAATAAAAGAAGCTGAAATGGACAACAAGATAGTAGCTATACACGCAGCAATGGGTGGTGGAACAGGTCTAAATTATTTCCAAAAAAGGTTTCCAGACCGCTGTTTTGACACGGGTATAGCTGAACAACACGCTGTGACATTCGCAGCTGGTTTAGCCGCAGAAGGTCTCAAGCCATTTTGTGCAATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCTGTCCGATTTGCCATGGATAGAGCTGGTTTGGTAGGTGCAGATGGACCAACACATTGTGGAGCATTTGATATCACATACATGGCTTGCTTACCCAACATGGTGGTCATGGCTCCATCTGATGAAACTGAACTGATGCACATGGTCGCAACAGCTGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGCAATGGAATTGGATCCATTTTACCCCTCAATAACAAAGGAACCCCACTTGAGATAGGAAAAGGCAGAATTATGATAGAAGGCAGCAGAGTTGCTATTTTGGGATATGGTTCTGTAGTTCAACAATGCCTGCAAGCTGCACAAATGCTCAAGACACTAGACATTCATGTGACAGTTGCAGATGCAAGGTTTTGCAAACCTTTAGATACTGATCTCATTAAGCTATTAGCTATGGAGCATGAATTTCTCATCACAGTGGAAGAGGGTTCTATTGGAGGTTTTGGATCACATGTTTCACAGTACCTAAGCATAACTGGTATATTAGATGGACCTCTGAAGTGGAGAGCAATGACGCTTCCCGATAAATACATTGAGCATGGAGCACCACAAGATCAGGCTGAAGAAGCTGGACTTTCATCAAAGCATATTGCTGCAACAATCTTGTCTCTTCTTGAAAAGCCAAAAGAAGCTCTTTTGTTCAAGTAA 2202 0.4196 MSLSTTFLNPNMHSFLPYHKTLSPNHGYIKQFCVRASASNSEDGERTIIKKEKDGWNIKFSSKKPETPLLDTINYPLHMKNLSIQDLEQLAAELRSDIVHTVSNIGGHLSSNLGVVELSVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGAGHSSTSISAGLDIKKVESNSGCSFVLVAAKMVGMAVARDLLGKNNSVISVIGDGAMTAGQAYEAMNNAGFLDANLIIILNDNKQVSLPTATLDGPATPVGALSRNLSKIQASTKFRKLREAAKTVTKQIGGQAHQVAAKVDEYGRGMINGSGSTFFEELGLYYIGPVDGHNIEDLVHIFENVKAMPAPGPILIHVVTEKGKGYPPAEAAADKMHGVVKFDPPSGHQFKQKSSRLTYTQYFAESLIKEAEMDNKIVAIHAAMGGGTGLNYFQKRFPDRCFDTGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDETELMHMVATAAAIDDRPSCFRFPRGNGIGSILPLNNKGTPLEIGKGRIMIEGSRVAILGYGSVVQQCLQAAQMLKTLDIHVTVADARFCKPLDTDLIKLLAMEHEFLITVEEGSIGGFGSHVSQYLSITGILDGPLKWRAMTLPDKYIEHGAPQDQAEEAGLSSKHIAATILSLLEKPKEALLFK 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1086 733 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 67 475 IPR029061 -
Lal23g1086 733 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 200 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 210 376 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 Gene3D - 413 579 - -
Lal23g1086 733 ProSitePatterns Transketolase signature 1. 95 114 IPR005474 -
Lal23g1086 733 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 733 - -
Lal23g1086 733 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 733 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 ProSitePatterns Transketolase signature 2. 519 535 IPR020826 -
Lal23g1086 733 Pfam Transketolase, pyrimidine binding domain 413 574 IPR005475 -
Lal23g1086 733 CDD TPP_DXS 106 382 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 72 723 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 410 601 IPR029061 -
Lal23g1086 733 Pfam Transketolase, C-terminal domain 592 715 IPR033248 -
Lal23g1086 733 CDD TPP_PYR_DXS_TK_like 419 572 - -
Lal23g1086 733 Gene3D - 592 724 IPR009014 GO:0003824
Lal23g1086 733 SMART Transket_pyr_3 413 578 IPR005475 -
Lal23g1086 733 Gene3D - 62 385 - -
Lal23g1086 733 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 724 IPR005477 GO:0008661|GO:0016114
Lal23g1086 733 SUPERFAMILY TK C-terminal domain-like 587 723 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1086 Lal-Chr23 12520765 12524856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1086 456 671 Acyl Lipid Metabolism Gene Families AT3G13450 21.681 7.29e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1086 K01662 - gmx:100799481 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1086 23 12520765 12524856 Lal23g1086 23 12520765 12524856 ECH