Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1085 ATGCAACACCCCAATTCCGCCGCCGAAAATGACAACCACCACCACCACCACCACAACAACAACAACAACAACAACAACGCCACCACATCGAAACGGAAGAGCCGTTTCAAGCGACCCATTTTCAAGGTCCTTCCGGGTCAGATCGCGTTCCGGATTGTTTGCCACTCGTCAATCATCGGCGGCCTCATCGGAAGCTCCGGCAGCTTCGTCTCCAGTCTCCGGCGAGAGACAGGTTGCAAAATCCACTGCGAGGAATCGGTCCCCGCCACTGAGGAACGAACGATCCTCGTGATTGGATCGATATTAAGCCGGAAAGGCGTGACCTTGATCGGCGTTGAGGGTGATGGTGGTGAGGTTGAGGTTTCGAATGCTCAAGAAGCTCTGCTTAGGATTTACGAGAGGATTTGGGAGTTAGAGGTAGAGAAAGTGAAGCGGGTTGTGTTGAATCGTGAGGTGCTGTGTAAGTTGTTGGCACACACTTCTCAGATTGGTGCTGTTGTGGGAAAAGGAGGGAAGAATATAAACACTATTAGGAACAACAGTGGTGCCAAAATCAGGGTTTGTCCCTCTCCACACTGTGCTCCTGAAGATCAGGAGTTAATTTTAATAACTGGTAAAATTTTGGCTGTAAAGAAAGCACTGATTGGTGTGTCTCAGTGTCTCCAAGATTGTCCACCATTAGCCAAAGTCCCAGCATCTTTGACCACACCAACTAATAACTATTCTGATAAGTCAACATCATCCCCTGATCCAGATGCCGAACTTTTTCCTCACTTTAATTCATGGATACACTCCATGGAAGGTCTATCTCTTAATGATGCTTCAAAAGGAAGAAACTCTAATGGAGCTTCTGGCCATGACTCAAAAGGGACAGAACACGAAGTTGCATTCAGATTGCTTTGCACTAATTCTGTAGCCGGGAGTGTGATTGGCGAAAAAGGGGCTATAGTCAGAGCTCTAGAATGCAAAACAGGTGCTTCCATTACCTTTTCACCTCCATTAGCTGAGTTTGCTGAGCGCATTGTCACAATTTCTGCTATAGAGAAGCTTGAATCAAGTTATTCTCCTGCACAAGATGCTGTTGTTCTTGTCTTTGCTAGAACTATTGAAGGTAAATTTGAAAGGGGTTTTCTCCCAGTCTCTGATATGGCATCACCTGTAACTGCGAGGATTTTAGTTTCGCCAAGCACGGTTAGTTATTTGAGTGGCAATGAAGGACGCATCATTTCAGAATTGAGAGAAGTTACTGGGTGTGACATACAAATATTGCATGGAGAGCTACTTCCAAGTGATGCTTCAGATAGTGATGTTGTAGTACAGATCACAGGTGGGTACAAATCTGTACCCAATGCTCTATATAAAATCACTTGTAGCATCAGGGATAATATGCCTAATGAAGTGCTTCCTGAAGCAAGAATGAAATCCAAATTGAAGGTGAATAAGGACCCTCCAAAGGGTAATCATTTTGCCCATGGAAAATCTGCTTCTACTTCTCGGAGGTTTATACCACAGAATGCAGGGGTTCGTGCTGCAGGGAATGGACACACTGGTTTAAGTGGGAATCGGGGACGTGGGAGAGGAAACAAGGTTGCTACCGTGACAAATACTACTGTGGAGATTAAGGTTTCGGAACATGTCTTTAGTTCTGTTTATGGTGAAGATGGTGGAAATTTAGATCGAATCAAACAGATTTCTGGTGCAAGTGTTACAGTTTATGATCCTTCTGTTGGTACAAGTGAAGGGAGGGTTGTTATATCTGGTACACCTGATCAGACCTTTGCAGCTCAGAGCTTGCTTCAAGCATTCATTCAAGCAGGACAAATAGCACCAGAGTCTTAG 1839 0.4497 MQHPNSAAENDNHHHHHHNNNNNNNNATTSKRKSRFKRPIFKVLPGQIAFRIVCHSSIIGGLIGSSGSFVSSLRRETGCKIHCEESVPATEERTILVIGSILSRKGVTLIGVEGDGGEVEVSNAQEALLRIYERIWELEVEKVKRVVLNREVLCKLLAHTSQIGAVVGKGGKNINTIRNNSGAKIRVCPSPHCAPEDQELILITGKILAVKKALIGVSQCLQDCPPLAKVPASLTTPTNNYSDKSTSSPDPDAELFPHFNSWIHSMEGLSLNDASKGRNSNGASGHDSKGTEHEVAFRLLCTNSVAGSVIGEKGAIVRALECKTGASITFSPPLAEFAERIVTISAIEKLESSYSPAQDAVVLVFARTIEGKFERGFLPVSDMASPVTARILVSPSTVSYLSGNEGRIISELREVTGCDIQILHGELLPSDASDSDVVVQITGGYKSVPNALYKITCSIRDNMPNEVLPEARMKSKLKVNKDPPKGNHFAHGKSASTSRRFIPQNAGVRAAGNGHTGLSGNRGRGRGNKVATVTNTTVEIKVSEHVFSSVYGEDGGNLDRIKQISGASVTVYDPSVGTSEGRVVISGTPDQTFAAQSLLQAFIQAGQIAPES 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1085 612 CDD PCBP_like_KH 50 131 - -
Lal23g1085 612 CDD PCBP_like_KH 154 215 - -
Lal23g1085 612 Gene3D K Homology domain, type 1 532 606 IPR036612 GO:0003723
Lal23g1085 612 ProSiteProfiles Type-1 KH domain profile. 294 361 - -
Lal23g1085 612 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 26 494 - -
Lal23g1085 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 289 346 IPR036612 GO:0003723
Lal23g1085 612 ProSiteProfiles Type-1 KH domain profile. 47 128 - -
Lal23g1085 612 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 26 494 - -
Lal23g1085 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 102 IPR036612 GO:0003723
Lal23g1085 612 CDD PCBP_like_KH 297 365 - -
Lal23g1085 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 381 469 IPR036612 GO:0003723
Lal23g1085 612 SMART kh_6 534 604 IPR004087 GO:0003676
Lal23g1085 612 SMART kh_6 46 133 IPR004087 GO:0003676
Lal23g1085 612 SMART kh_6 385 460 IPR004087 GO:0003676
Lal23g1085 612 SMART kh_6 150 222 IPR004087 GO:0003676
Lal23g1085 612 SMART kh_6 293 366 IPR004087 GO:0003676
Lal23g1085 612 Gene3D - 294 464 - -
Lal23g1085 612 CDD KH-I 537 600 - -
Lal23g1085 612 ProSiteProfiles Type-1 KH domain profile. 386 455 - -
Lal23g1085 612 Pfam KH domain 51 101 IPR004088 GO:0003723
Lal23g1085 612 Pfam KH domain 388 455 IPR004088 GO:0003723
Lal23g1085 612 Pfam KH domain 156 214 IPR004088 GO:0003723
Lal23g1085 612 Pfam KH domain 298 346 IPR004088 GO:0003723
Lal23g1085 612 Pfam KH domain 537 600 IPR004088 GO:0003723
Lal23g1085 612 ProSiteProfiles Type-1 KH domain profile. 535 599 - -
Lal23g1085 612 MobiDBLite consensus disorder prediction 1 32 - -
Lal23g1085 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 151 225 IPR036612 GO:0003723
Lal23g1085 612 MobiDBLite consensus disorder prediction 508 527 - -
Lal23g1085 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 535 604 IPR036612 GO:0003723
Lal23g1085 612 Gene3D K Homology domain, type 1 148 225 IPR036612 GO:0003723
Lal23g1085 612 Gene3D K Homology domain, type 1 45 138 IPR036612 GO:0003723
Lal23g1085 612 ProSiteProfiles Type-1 KH domain profile. 151 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1085 Lal-Chr23 12515214 12520331 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1085 K21444 - gmx:100793130 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1085 23 12515214 12520331 Lal23g1085 23 12515214 12520331 ECH