Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1039 ATGCACGTGCATGCTGAACCAGATGGTGACAGTGATGAATTGCAGCCAACAGAAGAAAACGTGGGAAACAAAAACCGCACCGAAATGGCGGCAAGGACAAAACCAGCGAAGAAACATAGTCTTTCTGATGGAATGTTTTCTGGAATGGTCGTCTTTTTGGTTCCCATTAGAGTTCAACCTCGCCGTTTCCAGATTTGGAAGCAGAGGTTGATGCAAATGGGAGCTGTGATAGAGGATCGACTATCTAAACGTGTCACTCATGTTTTTGCAATGGACTCTAATGCCCTTTTCAATGAATTTGACAAGGAACGTTTCTCACGTTTTAAAGGGACAGCCCTCCAGTATCAATGGCTTGAGGACAGCTTGAAATCTGGGGAGAAACTATCTCAGGATATGTATGTGCTGAGATTGGATCCTCAAGGTGAACATATACCTGATAAGTCGTTAGATCCCGAGCCAGGTAATGAGAACATCTCTAGCGATGCTCAGCAATTACAGAATAAAAGGATGAAAACAGCTTCTGAGGATATGGAAATTGTAAATCTTGAAAATAACGAAGATAGAAGAGAAAATAGTCCATTTTCATCTACAAGCATGGCAACCAGTCATGGTGAAGTTGACAATTTAAGTTATGCAAACACAAGACCTCAACAACTTGATACTGAAAATGATTCATCCTTGTCATATTGTCCCCCTGATCTAAACAAGAACATAACAGAAATATTTGGGAAACTTGTGAACATATATAGAGCTTTGGGTGATGACCGGAGGTCGTTTAGCTATTACAAGGCTATTGCAGTGATTGAGAAGTTGCCATTTAAAATTGAAAACGCTGACCAAATAAAAGACCTGCCGTCAATTGGAAAATCAATGAAAGATCATATTCAGGAGATAATAACTACTGAAAAGTTATCCAAATTGGAACATTTTGAAACTGATGAGAAGGTTCGAACAATATCCTTATTTGGAGAAGTATGGGGCATAGGTCCAGCCACAGCACTGAAATTGTATGAGAAAGGACACCGTACATTAGATGATCTGAGGAATGACAATTCACTTACAAATGCACAAATGTTAGGGTTGAAATACTTTGATGATATCATGCAACGGATTCCACGCGATGAGGTACAAGAGATGGAACACATTTTGCAGAAAGCCGGGGAAGATGTTTTGCCTGGGGTTGTTATCGTTTGCGGGGGATCTTATAGGCGTGGGAAAGCTACATGTGGAGATATTGATATCATTATAACACATCCTGATGGAACTAGTCACAAAGGATTTTTGCCAAAATTTGTAAAGCAGTTGAAGGATATGAATTTTGTGAGAGAAGATTTAATTTTCAGTACTCACAGTGAAGAGGGTACTGATTCTGGTGTTGACACATACTTTGGTTTTTGTACCTATCCTGGACGGGAGCTGCGACACCGTATTGATTTAAAGGTATATCCAAGAGACATATATGCTTTTGGACTACTAGCTTGGACAGGAAATGATGTATTAAATAGGAGGTTGAGACTGCTAGCAGAATCTAAAGGATTTCGGCTTGATGATACAGGGTTGTTTCCATCTACTCAGGGTTCTGGTGGCAAACGGGGTGCAAAAGGTAGTGCAAGTTTGAAGTTTTATACAGAAAAGGAGATCTTTGATTTCCTGGGCTTTCCTTGGCTTGAACCACATGAAAGAAATCTCTAA 1692 0.4007 MHVHAEPDGDSDELQPTEENVGNKNRTEMAARTKPAKKHSLSDGMFSGMVVFLVPIRVQPRRFQIWKQRLMQMGAVIEDRLSKRVTHVFAMDSNALFNEFDKERFSRFKGTALQYQWLEDSLKSGEKLSQDMYVLRLDPQGEHIPDKSLDPEPGNENISSDAQQLQNKRMKTASEDMEIVNLENNEDRRENSPFSSTSMATSHGEVDNLSYANTRPQQLDTENDSSLSYCPPDLNKNITEIFGKLVNIYRALGDDRRSFSYYKAIAVIEKLPFKIENADQIKDLPSIGKSMKDHIQEIITTEKLSKLEHFETDEKVRTISLFGEVWGIGPATALKLYEKGHRTLDDLRNDNSLTNAQMLGLKYFDDIMQRIPRDEVQEMEHILQKAGEDVLPGVVIVCGGSYRRGKATCGDIDIIITHPDGTSHKGFLPKFVKQLKDMNFVREDLIFSTHSEEGTDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLLAWTGNDVLNRRLRLLAESKGFRLDDTGLFPSTQGSGGKRGAKGSASLKFYTEKEIFDFLGFPWLEPHERNL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1039 563 Pfam DNA polymerase beta thumb 491 562 IPR029398 -
Lal23g1039 563 MobiDBLite consensus disorder prediction 153 170 - -
Lal23g1039 563 CDD NT_POLXc 236 561 IPR002054 GO:0003677|GO:0003887
Lal23g1039 563 ProSiteProfiles BRCT domain profile. 41 135 IPR001357 -
Lal23g1039 563 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 231 310 IPR027421 -
Lal23g1039 563 Gene3D - 207 309 IPR027421 -
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 286 303 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 358 372 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 398 417 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 475 483 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 490 497 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X pol beta-like signature 544 561 IPR002008 GO:0003677|GO:0006281
Lal23g1039 563 ProSitePatterns DNA polymerase family X signature. 400 419 IPR019843 GO:0016779
Lal23g1039 563 MobiDBLite consensus disorder prediction 191 207 - -
Lal23g1039 563 Gene3D BRCT domain 36 137 IPR036420 -
Lal23g1039 563 Gene3D Beta Polymerase, domain 2 370 492 IPR043519 -
Lal23g1039 563 SUPERFAMILY BRCT domain 43 136 IPR036420 -
Lal23g1039 563 MobiDBLite consensus disorder prediction 1 40 - -
Lal23g1039 563 Pfam DNA polymerase beta palm 370 483 IPR028207 -
Lal23g1039 563 MobiDBLite consensus disorder prediction 141 207 - -
Lal23g1039 563 PANTHER DNA POLYMERASE IV 45 562 - -
Lal23g1039 563 Gene3D DNA polymerase, thumb domain 493 561 IPR037160 -
Lal23g1039 563 Pfam Helix-hairpin-helix domain 235 299 IPR010996 -
Lal23g1039 563 Pfam Fingers domain of DNA polymerase lambda 321 367 IPR018944 GO:0003677|GO:0034061
Lal23g1039 563 MobiDBLite consensus disorder prediction 171 190 - -
Lal23g1039 563 PRINTS DNA-polymerase family X signature 327 344 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X signature 397 411 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X signature 411 419 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X signature 476 485 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X signature 492 505 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 PRINTS DNA-polymerase family X signature 543 561 IPR022312 GO:0003677|GO:0003887|GO:0006281
Lal23g1039 563 SUPERFAMILY Nucleotidyltransferase 370 562 IPR043519 -
Lal23g1039 563 SUPERFAMILY PsbU/PolX domain-like 313 368 - -
Lal23g1039 563 SMART polxneu3 233 562 IPR002054 GO:0003677|GO:0003887
Lal23g1039 563 Gene3D - 310 369 - -
Lal23g1039 563 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 45 562 IPR022312 GO:0003677|GO:0003887|GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1039 K03512 - gmx:100820492 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1039 23 12163290 12170639 Lal23g1039 23 12163290 12170639 ECH