Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1036 ATGGGAAATAACATGAAATCATACCTCTTTACAGTCCTATTATTCTCTCTTCTATCTTCTGCCATCGGTGCCTATAAAACTTCCTTAATCAAAAGTGAGCCAACCACAACTTCAGCACCAGTTGAAATAACAGATATTGCTGCAGCCAAACAATATCTTTATGACTTGGGATACATCACTAACTCATCATATCCATTCTCAGATATCTTAGACACTGAAACCATATCAGCTATAAAAACTTACCAAAAGTTTTTCAACCTCGACGTTACTGGCATTCTAGACAATAAAACCCTTAACCAAATGACTCTCCCACGATGTGTTGTTCCCGATCTGAACCTCGTTTATGACCTTAACTCCGAAACCAACGTGTCTTGGCCCCAAGGGATTCGTTGGTTCCCTAATGGCACAAGTACTAATCACCTCACATATGGTTTTCTTCCACAAAGTAAAATCCCACACCACTTTCAAAAGGTGTTTATTGATGCATTCAATCGGTGGTCTGAGGCTATAGCGGAGCTGAAACTAGCAAAGTTAAACTTCACGAAGACGAATTACAAAACATCTGATATCAAGATAGGGTTCTACTTCTTGGACAATAGCGTTGAGAATGTGGTTGGGGGTACCATTATGCGATATGAAAAAGGTTTTGGAGGTAAAATTGTTGGAGATATTCGTCTAGATGCTTCCAAGTACTGGGTTTTGCCGGGTGATAATGGCACTTGGTCGTGGAAAGATGGAGACTTTGATCTTGGAACTGTGGCAATGCATCAGATAGGTCATATACTAGGACTTAGTCACTCCTCTAATGTGAAATCAGTTATGTATCCTTCTATATTGACAGAAAACGAAATAAAGGTTGAGCTCATAGCTAATGATAAGAGTAACATCCAGAATGTATATAGAGAAATTTCCAGCGCCACCGTTTCTGGTTATGGTGCTCATTTTTTCACCCTATTTGGGTTCTTATTAATTTCTCCCTTGGATTTATTCTTCTCTTCAACTAGTTTTTGA 1011 0.3897 MGNNMKSYLFTVLLFSLLSSAIGAYKTSLIKSEPTTTSAPVEITDIAAAKQYLYDLGYITNSSYPFSDILDTETISAIKTYQKFFNLDVTGILDNKTLNQMTLPRCVVPDLNLVYDLNSETNVSWPQGIRWFPNGTSTNHLTYGFLPQSKIPHHFQKVFIDAFNRWSEAIAELKLAKLNFTKTNYKTSDIKIGFYFLDNSVENVVGGTIMRYEKGFGGKIVGDIRLDASKYWVLPGDNGTWSWKDGDFDLGTVAMHQIGHILGLSHSSNVKSVMYPSILTENEIKVELIANDKSNIQNVYREISSATVSGYGAHFFTLFGFLLISPLDLFFSSTSF 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1036 336 Gene3D Collagenase (Catalytic Domain) 36 305 IPR024079 GO:0008237
Lal23g1036 336 SUPERFAMILY PGBD-like 36 111 IPR036365 -
Lal23g1036 336 PANTHER MATRIX METALLOPROTEINASE 43 302 - -
Lal23g1036 336 PANTHER MATRIXIN PROTEIN 43 302 - -
Lal23g1036 336 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 126 300 - -
Lal23g1036 336 Pfam Matrixin 138 300 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lal23g1036 336 PRINTS Matrixin signature 101 114 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal23g1036 336 PRINTS Matrixin signature 253 278 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal23g1036 336 PRINTS Matrixin signature 288 301 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lal23g1036 336 SMART col_5 127 305 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lal23g1036 336 Pfam Putative peptidoglycan binding domain 44 101 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1036 Lal-Chr23 12139756 12140766 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1036 - - lang:109331950 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1036 23 12139756 12140766 Lal23g1036 23 12139756 12140766 ECH