Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1000 ATGGCATCCTCAGAGATCGTGGTGGAATTAACATCATCAGATTCCAAACCTAACGAAAACCACGATCAGGATCAACCTTCCATTCTCGATGTTTTCACTGCTTCTGCTCATGGCCATTTTCCTAAATTGAGGTCCTTCGTTGAACAACATGGTGCTTCTGTTTCTGTTCCTGATGTTAATGGTTATTATGCTCTTCAATGGGCTTCTCTTAATAATTTCCATGAGATTGTTAACTATATCATTCAGCATGGGGGCGATGTTAATGCTACTGACTACATGCAACAAACAGCACTGCATTGGGCGGCAGTTCATGGTTCAACTGCAGCTGCTGATGTGCTCTTGGAGAATGGAGCCCGGGTTGAAGCTTCAGATATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAAACAGCTTTCTTAAATCACATTGTTGTAAAGTACCATGCTGATTTTGATGTGCCAGATAATGACGGAAGGAGTCCACTTCATTGGGCTGCATATAAGGGATACGCTGATACAGTAAGATTGCTTCTATTTAGAGATGCAAGTCAAGAGAGACAAGATAAAGATGGGTGTACACCGTTGCACTGGGCTGCATTAAGAGGACATTCAGAGGCGTGTGCTGTGCTTGTACATTCAGGCACAAAGAAAGAACTAACAGTGAAGGACAATGCTGGATTCACTCCTGTGCAGCTTGCAAATGATAACGGTCATCGGCATGTCGCCCCTTTCCTTTCTAATCAACAACGGGCTCATAGCAACCACTGGAGACGAAAATTTTGTAGTTTGATGTTTACAAATACTGGTTATGCTCCCATCTTATTCTGTATTATAGTCTTTCTCACGATCCTCTTCATCCACTCAGTCGTTGCAGCTCCTAATCTTAAAAGGATTACTGCTGTTGTTGGACTTTGGGCCTGTACAACTTTTTCTCTAGCAGTTGGTTCCCTGATTATGTTTTATAAGTGTAGTAGCAAAGATCCAGGTTACATAAAACGGCCAGGAGACTTAGGTACTGAAAGTGATGCAGAGGATCCTTTGTTGCATATTGATCTGAATAGCTCATCTGTTTGGGTGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATTATAAGACCTGTGCGATCTAAGCATTGCCCTACTTGTAACCGTTGCGTGGAACAGTTTGATCACCATTGTCCGTGGATATCTAACTGTGTGGGAAAGAGGAACAAAAGGGATTTTTTTATCTTTATCTGCTTTGCAACTTTGACTTCTTCCTTTAGTGCTGTCATTGCAATTCAAAGAATTTGGACATCTACAACATTATCAACAGGAGAAGCATGGTTCCATCATGTGTTGGTTAGACATCCAAGTATAATTTTATTTTTGGTGATGGATGCTGTTGTTTTCACTGCGGCTACGACTTTGACGATAACACAGGCTTCCATGATAGCTCGAAATTTGACCACAAATGAAGTTGCAAATTCATCCCGTTATGAATATCTTCGTGGTCCTGATGGACGATTCAGAAACCCATATAACAACGGTTGTTGGAAGAATTGTACTGACTTTGTTCTTCTTGGCTACTCAGATGACGATCACATTGCTTGGCCTCCATTACAGCAGGTGGTGATGTAG 1632 0.4197 MASSEIVVELTSSDSKPNENHDQDQPSILDVFTASAHGHFPKLRSFVEQHGASVSVPDVNGYYALQWASLNNFHEIVNYIIQHGGDVNATDYMQQTALHWAAVHGSTAAADVLLENGARVEASDINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGYADTVRLLLFRDASQERQDKDGCTPLHWAALRGHSEACAVLVHSGTKKELTVKDNAGFTPVQLANDNGHRHVAPFLSNQQRAHSNHWRRKFCSLMFTNTGYAPILFCIIVFLTILFIHSVVAAPNLKRITAVVGLWACTTFSLAVGSLIMFYKCSSKDPGYIKRPGDLGTESDAEDPLLHIDLNSSSVWVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFIFICFATLTSSFSAVIAIQRIWTSTTLSTGEAWFHHVLVRHPSIILFLVMDAVVFTAATTLTITQASMIARNLTTNEVANSSRYEYLRGPDGRFRNPYNNGCWKNCTDFVLLGYSDDDHIAWPPLQQVVM 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1000 543 Pfam Ankyrin repeats (3 copies) 34 124 IPR002110 GO:0005515
Lal23g1000 543 PANTHER - 12 531 - -
Lal23g1000 543 Pfam DHHC palmitoyltransferase 367 493 IPR001594 GO:0016409
Lal23g1000 543 MobiDBLite consensus disorder prediction 1 25 - -
Lal23g1000 543 ProSiteProfiles Ankyrin repeat region circular profile. 160 192 - -
Lal23g1000 543 ProSiteProfiles Ankyrin repeat profile. 160 192 IPR002110 GO:0005515
Lal23g1000 543 ProSiteProfiles Ankyrin repeat profile. 93 125 IPR002110 GO:0005515
Lal23g1000 543 ProSiteProfiles Ankyrin repeat region circular profile. 60 91 - -
Lal23g1000 543 Gene3D - 5 146 IPR036770 -
Lal23g1000 543 ProSiteProfiles Ankyrin repeat profile. 60 92 IPR002110 GO:0005515
Lal23g1000 543 ProSiteProfiles Ankyrin repeat region circular profile. 193 217 - -
Lal23g1000 543 ProSiteProfiles Ankyrin repeat profile. 193 225 IPR002110 GO:0005515
Lal23g1000 543 ProSiteProfiles Ankyrin repeat profile. 126 159 IPR002110 GO:0005515
Lal23g1000 543 PANTHER PROTEIN S-ACYLTRANSFERASE 24 12 531 - -
Lal23g1000 543 ProSiteProfiles DHHC domain profile. 367 417 - -
Lal23g1000 543 Gene3D - 147 255 IPR036770 -
Lal23g1000 543 SMART ANK_2a 160 189 IPR002110 GO:0005515
Lal23g1000 543 SMART ANK_2a 60 89 IPR002110 GO:0005515
Lal23g1000 543 SMART ANK_2a 126 156 IPR002110 GO:0005515
Lal23g1000 543 SMART ANK_2a 193 222 IPR002110 GO:0005515
Lal23g1000 543 SMART ANK_2a 228 257 IPR002110 GO:0005515
Lal23g1000 543 SMART ANK_2a 93 122 IPR002110 GO:0005515
Lal23g1000 543 SUPERFAMILY Ankyrin repeat 5 250 IPR036770 -
Lal23g1000 543 ProSiteProfiles Ankyrin repeat region circular profile. 93 124 - -
Lal23g1000 543 Pfam Ankyrin repeats (many copies) 162 213 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1000 Lal-Chr23 11883548 11892560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1000 96 248 Miscellaneous Gene Families AT1G07710 29.518 1.90e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1000 K20032 - gmx:100798740 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1000 23 11883548 11892560 Lal23g1000 23 11883548 11892560 ECH