Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0997 ATGGAAGCACATGCAGGAGCCAATCAACGCATTGCAAGAATCTCTGCTCATCTTCATCCTTCAAATTTCAAGGAGGGAGGTGATGTTGTTCTTAAGAGAGAAGAGTGCAGAGCAAAAGGTGGTGCACCTGGATTCAAAGTAGCAATTTTGGGGGCTGCTGGTGGAATTGGACAACCCCTTGCCTTGCTGATGAAGATTAACCCGTTGGTTTCAGTTCTTCATCTCTATGATGTTGTCAATTCCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACTGGTGCAGTGGTGCGTGGCTTCCTGGGGCAGCCACAACTTGAGAGTGCACTCACTGGCATGGACTTAGTGATTATACCTGCTGGAGTGCCAAGAAAACCTGGAATGACAAGAGATGATTTATTCAAAATAAATGCTGGAATTGTGAGGACCCTTTGTGAAGGAGTTGCCAAGTCCTGCCCTGGCGCAATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTTCCCATTGCTGCAGAGGTTTTTAAGAAAGCTGGTATATATGACCCAAAGCGACTTCTCGGTGTTACAACCCTTGATGTTGTCAGGGCAAATACTTTTGTGGCAGAGGTGCTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTGGGAGGTCATGCAGGAGTCACTATACTACCTCTTTTATCTCAGGTTAAGCCTCCTAGTAGCTTCAGTGCAGAAGAAACTGAGTACCTGACAAATCGCATCCAAAATGGTGGAACGGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGCATACGCAGCTGCGAAGTTTGCTAATGAATGCCTCCGTGGCTTGAAAGGAGAATCTGGAGTGGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACCGAACTTCCCTTCTTTGCAACCAAGGTACGCCTTGGTCGTGGTGGAGCAGAAGAGATATATCAACTGGGTCCCCTGAATGAATATGAAAGGATTGGTTTGGAGAAAGCAAAGAAAGAGTTAGCAGAAAGCATCCAGAAGGGAATAGACTTCATCAAAAAATAA 1071 0.4603 MEAHAGANQRIARISAHLHPSNFKEGGDVVLKREECRAKGGAPGFKVAILGAAGGIGQPLALLMKINPLVSVLHLYDVVNSPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGVAKSCPGAIVNLISNPVNSTVPIAAEVFKKAGIYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFSAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANECLRGLKGESGVVECAFVDSQVTELPFFATKVRLGRGGAEEIYQLGPLNEYERIGLEKAKKELAESIQKGIDFIKK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0997 356 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 355 IPR010097 GO:0006099|GO:0030060
Lal23g0997 356 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Lal23g0997 356 SUPERFAMILY LDH C-terminal domain-like 189 355 IPR015955 GO:0003824|GO:0016616
Lal23g0997 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Lal23g0997 356 Gene3D - 37 189 - -
Lal23g0997 356 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 2 356 - -
Lal23g0997 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Lal23g0997 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Lal23g0997 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Lal23g0997 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 356 - -
Lal23g0997 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Lal23g0997 356 PIRSF Lac_mal_DH 44 355 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0997 Lal-Chr23 11869129 11872657 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0997 K00026 - gmx:100170735 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0997 23 11869129 11872657 Lal23g0997 23 11869129 11872657 ECH