Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0759 ATGGCTTTAACACTTCGTTCTTCAATTTCTTTCATTAATAAGAAAGAATCCTACTTCCTTAAAGCTTATGATGATGCCTCTACCACAGTTAACTTTGCAAAAAACAAGCCATTATTCCCTATCAGGGCAAAGAGTTCCTTGCAAGAAGCACAGAAAAGCTTCAACTCAGAAGCAATGAGAATTGAGAAAGGTGAGATAGTGCATGTGCCATCAGTTGTTCATCATAAACACAATGATGATTCAAAGAAAGTACCTGTGTTTGTGATGCTGCCACTAGACACAGTAACATTTGGAGGACACTTGAATAAGGCAAGAGCAATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGCCCTTTGAAGTATAACTGGAATGGCTATGTTGAGCTTGTGCAGATGCTACAAATGCATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACTCCTGCAGCATTCCTCTACCACCATGGGTGATGGAAGAGATAAGTAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAACCCTGAGTACATCTCCTTGGGCTGTGATTCAATGCCTGTTCTAAAAGGAAGAACTCCTCTCCAGGTTTATGCTGACTACATGAGGAGTTTCCGTGACAGATTCAAAGATTACTTGGGCAGTGTTATAGTGGAAATACAAGTTGGGATGGGTCCTTGTGGTGAGCTGAGATATCCATCTTACCCAGAAAGCGATGGAACCTGGAAGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGATAGCATCCTTGGCATCAGCAGCTGAGGCTGTGGGGAAGAAAGAATGGGGAAGAAGTGGTCCCCATGACTCAGGCCAGTATAATCAGTTTCCTGAGGATACTGGATTTTTCAAAATGGAAGGAACATGGAACTCTGAGTATGGACAGTTCTTTCTGAAATGGTACTCCAATAAATTGTTAGTACATGGTGAGAGCCTCCTAGCATCTTCCAAAGGGATATTCCACACATCTGGGGTGAAGCTATCTGGGAAAGTTGCTGGAATCCATTGGCATTACAGAGCAAGGTCACACGCAGCAGAACTAACCGCCGGCTACTATAATACACTATATAATGATGGTTATCTACAGATAGCCAAAATGCTGGCAAGACATGGAGTTGTCCTCAATTTCACCTGCATGGAAATGAAAGACAGAGAGCAGCCTGATCATGCTAACTGCTCACCGGAAGGGTTAGTTCACCAAGTAAAGATGGCAACCAGGATAGCTGGAGCAGAACTTGCCGGGGAAAATGCTTTGGAAAGATATGATGCAGATGCATATGCTCAAGTTTTGTTGACAAGTCAGTCAGACTCTGGCAATGGATTGGCTGCCTTTACGTTTCTAAGACTGAATAAGAAGTTGTTTGATGGTGATAATTGGCGGCAACTAGTGGAGTTTGTAAGAAGCATGTCTGAAGGTGGTCGGAGACAAAGACTGTCAGACTCTGATTCCCAGGCGAGCGATCTTTATGTTGGGCATATCAAGGAAATTCAGAAGACAGAACAAGAGCAAGACATAGCTATTGTGTAA 1644 0.4343 MALTLRSSISFINKKESYFLKAYDDASTTVNFAKNKPLFPIRAKSSLQEAQKSFNSEAMRIEKGEIVHVPSVVHHKHNDDSKKVPVFVMLPLDTVTFGGHLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWNGYVELVQMLQMHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVMEEISKNPDLVYTDRSGRRNPEYISLGCDSMPVLKGRTPLQVYADYMRSFRDRFKDYLGSVIVEIQVGMGPCGELRYPSYPESDGTWKFPGIGEFQCYDKYMIASLASAAEAVGKKEWGRSGPHDSGQYNQFPEDTGFFKMEGTWNSEYGQFFLKWYSNKLLVHGESLLASSKGIFHTSGVKLSGKVAGIHWHYRARSHAAELTAGYYNTLYNDGYLQIAKMLARHGVVLNFTCMEMKDREQPDHANCSPEGLVHQVKMATRIAGAELAGENALERYDADAYAQVLLTSQSDSGNGLAAFTFLRLNKKLFDGDNWRQLVEFVRSMSEGGRRQRLSDSDSQASDLYVGHIKEIQKTEQEQDIAIV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0759 547 SUPERFAMILY (Trans)glycosidases 82 511 IPR017853 -
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 118 132 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 139 157 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 182 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 253 275 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 328 347 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 380 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 381 392 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 399 422 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 436 458 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 ProSitePatterns Beta-amylase active site 1. 165 173 IPR018238 GO:0000272|GO:0016161
Lal23g0759 547 Pfam Glycosyl hydrolase family 14 87 504 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PANTHER - 1 547 IPR001554 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Plant beta-amylase signature 243 252 IPR001371 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Plant beta-amylase signature 402 412 IPR001371 GO:0000272|GO:0016161
Lal23g0759 547 PRINTS Plant beta-amylase signature 484 498 IPR001371 GO:0000272|GO:0016161
Lal23g0759 547 Gene3D Glycosidases 76 546 - -
Lal23g0759 547 PANTHER BETA-AMYLASE 1 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0759 Lal-Chr23 10163620 10168862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0759 1 533 Glycoside Hydrolase AT4G17090 71.004 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0759 K01177 - gmx:100818063 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0759 23 10163620 10168862 Lal23g0759 23 10163620 10168862 ECH