Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0509 ATGATGGCGTCTCAATCAACCACAACCTTCTCCCCTTCCTTTATCTCCACTCGCACCAACACCACCGATTCCACTCACCTAACTCGCTTCCCCTTCCGAACCAGACCCCAAACTCGTTTCTCAACTCGCCGACTCGTTCTCTCGTCTCGCCTCAACTCATCGAAATCTTCAGATGCCGGTGGCTCCGTCAACAACGGCGATTTCGCCTACGAGCTCCACCATGATTTCTACCGTCACAGGAAGAAAGGATCGCCGGTTTTCGTCACACTACCGGTGAATTCTGTCGGTTTGGAGGGCCGAATTTCCAGGCCGAAGGCGATGATGTTGTCGCTTAGGGCGCTCGCCGCGGCGGGGGTTGAAGGCGTGGTTGTTGAGATTTGGTGGGGGTTGGTTGAGAGGAATGAGCCTAGGGTTTATGATTGGCGAGGCTATCGTGAACTCATCGCGATGGCTTCAATGTGTGGCCTTAAGGTTCGAACTGTTCTTGCGTTTCATCAGTATGGAACAGTAACTGATGATCCTAATCGGATACCACTTCCTCTGTGGGTGCTTGATGAGATACAAAAAGATCCAGAGTTAGCATATTCTGACAGGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTTTTCCCGTGCTGCGTGGACGCTCTCCTATTCAAGCATATGCAGATTTTATGAGGGACTTCAGGGAAACTTTCAGGCCTTCGCTTGGTTGTATCATTACAGGTGTACTTATTGGCATGGGTCCCGGTGGGGAACTAAGATATCCTTCATTCTCTTCCCTCAAGCCAAATCATCATGAACTTGGAGAGTTTCAATGCTACGATAAGTATATGCTTGCTTCTCTAAATGCGTGTGCAAGAGATATAGATAAGCGTGAATGGGGAAACGGTGGTCCATTTGGTACTGGAAGTTTGATGCAAAATCCTGAGCATGCTGATTTTTTTAGAAATAAGGATGGCTCATGGAACACACCATATGGTGAATTTTTCCTTAAATGGTACTCAGATATGTTGCTACTGCATGGAGAGAGAATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCGTATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGCCACACAATCCCATCCATCGGAGTTAACAGCAGGCTATTATAATACTTCTAATAGGGATGGCTACTTTCCCATTGCCCGCATGTTTAGCAAGTATGGATTCTCAATTTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTAATGAAGACAATAAACCCTGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTACTTGCTGCTAGGCTTTGTGATCTATCACTTGAAGGTCAAAATTATTCAACTAATTTGGATGATGGTGCATTCAACCAAGTGCTAAAGATGTCAAAGTTCTACTCGAATGGGATTGAAAAGCGTCCCTTCTCATTTAACTTTGTAAGAATGGACAAAAAAATGTTTGAACCTCGGAATTGGGATCGGTTTACTCGTTTTGTGAGGCAAATGTCTGGCAGAAACATTTTTCGATCCAGATTAAATTCAAGTGACATAAGGTCGAAGACCACATCAAAGGCCACAGAAGTAGGGCTACTGTACCCGCACTCTTGA 1635 0.4483 MMASQSTTTFSPSFISTRTNTTDSTHLTRFPFRTRPQTRFSTRRLVLSSRLNSSKSSDAGGSVNNGDFAYELHHDFYRHRKKGSPVFVTLPVNSVGLEGRISRPKAMMLSLRALAAAGVEGVVVEIWWGLVERNEPRVYDWRGYRELIAMASMCGLKVRTVLAFHQYGTVTDDPNRIPLPLWVLDEIQKDPELAYSDRFGRRNIEYISLGCDIFPVLRGRSPIQAYADFMRDFRETFRPSLGCIITGVLIGMGPGGELRYPSFSSLKPNHHELGEFQCYDKYMLASLNACARDIDKREWGNGGPFGTGSLMQNPEHADFFRNKDGSWNTPYGEFFLKWYSDMLLLHGERICREAETIFRGTEVRISAKLAAIHWHYATQSHPSELTAGYYNTSNRDGYFPIARMFSKYGFSICCSCFEMQDAVMKTINPDGSPEGFLRQLLLAARLCDLSLEGQNYSTNLDDGAFNQVLKMSKFYSNGIEKRPFSFNFVRMDKKMFEPRNWDRFTRFVRQMSGRNIFRSRLNSSDIRSKTTSKATEVGLLYPHS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0509 544 PANTHER - 2 532 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 SUPERFAMILY (Trans)glycosidases 82 519 IPR017853 -
Lal23g0509 544 Pfam Glycosyl hydrolase family 14 87 507 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 Gene3D Glycosidases 76 539 - -
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 118 132 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 139 157 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 161 182 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 253 275 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 327 346 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 363 379 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 380 391 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 398 421 IPR001554 GO:0000272|GO:0016161
Lal23g0509 544 PANTHER BETA-AMYLASE 2 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0509 Lal-Chr23 7887890 7892560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0509 16 540 Glycoside Hydrolase AT4G17090 43.519 1.34e-154 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0509 K01177 - gmx:100805981 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0509 23 7887890 7892560 Lal23g0509 23 7887890 7892560 ECH