Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0288 ATGTCAAACAATGTTGGAATTCTCGCTGTTGACATCTATTTCCCTCCCACCTGCATTCAGCAGGAATCATTGGAGGCTCATGATGGTGCCAGTAAAGGGAAATACACTATTGGACTTGGACAAGATTGCATGGCATTTTGTTCTGAAGTAGAAGATGTCATTTCAATGAGTTTGACAGTGGTTACTTCTCTTCTTGAGAAGTATGGAATTGATCCAAAACAAATTGGTCGCCTGGAAGTAGGCAGTGAGACTGTGATAGACAAAAGCAAATCGATCAAGACATTTCTGATGCAGATCTTTGAGAAATATGGAAATACGGATATCGAAGGTGTTGATTCAAGCAATGCGTGCTATGGAGGAACTGCTGCTTTGTTCAATTGCGTCAATTGGGTGGAGAGCAGCTCATGGGATGGACGCTATGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCCGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCTGCTATTGCGATGCTAATTGGTCCTGATGCTCCCATTGCTTTTGAAAGCAAACTGAGGGGAAGTCATATGGCTCATGCTTATGATTTTTACAAGCCAAATCTTGCCAGTGAATATCCAGTTGTTGATGGGAAGCTATCTCAAACTTGTTACCTTATGGCTGTTGATACTTGCTATAAACATTTAAGTCACAAATATGAGAAACTTGAGGGAAAGCCATTTACTCTTAATGATGCTGATTACTTTGTATTTCACTCTCCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTATTCAATGATTACTTGAAGGATCCCAGCTCTGCGGATGAGATTACCAAAGAAAAGCTGGGACCTTTTGCAACTTTATCGGGTGATGAGAGCTACCAAAGCCGGGATCTAGAAAAGGCATCTCAGCAAGTTGCAAAAACTCTATATGATGCAAAGGTGCAACCAACTACTTTGGTACCTAAACAAGTTGGCAACATGTACACCGCGTCTCTCTATGCAGCATTTATTTCACTTATTCACAACAAGCATAGCACATTGGCTGGTAAGAGGGTGATACTATTCTCATACGGTAGTGGCTTAACTGCCACAATGTTTTCTTTGCAATTACATGATGGTCAAGGACCATTTAGCTTGTCAAACATTGCTAAAGTGATGGATGTTGCTGGAAAATTGAAGTCAAGGCATGAGTTTCCTCCAGAGAAATTTGTTGAAATCATGAAGCTAATGGAACACAGATATGGTGCCAAAGAGTTTGTAACAAGCAAGGATACTAGCCTTTTATCTCCAGGCACATACTATCTCACTGAAGTTGACTCCAAGTATAGGAGATTCTATGAAAAGAAAATCAGTGAATGCAATTTGACTCAAACAGAAAAAGGTGTGGTTGCCAATGGTCACTGA 1404 0.4117 MSNNVGILAVDIYFPPTCIQQESLEAHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSSNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMAVDTCYKHLSHKYEKLEGKPFTLNDADYFVFHSPYNKLVQKSFARLVFNDYLKDPSSADEITKEKLGPFATLSGDESYQSRDLEKASQQVAKTLYDAKVQPTTLVPKQVGNMYTASLYAAFISLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLHDGQGPFSLSNIAKVMDVAGKLKSRHEFPPEKFVEIMKLMEHRYGAKEFVTSKDTSLLSPGTYYLTEVDSKYRRFYEKKISECNLTQTEKGVVANGH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0288 467 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Lal23g0288 467 CDD init_cond_enzymes 4 368 - -
Lal23g0288 467 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Lal23g0288 467 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Lal23g0288 467 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Lal23g0288 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Lal23g0288 467 Gene3D - 1 450 IPR016039 GO:0016746
Lal23g0288 467 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 3 174 IPR013528 -
Lal23g0288 467 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0288 Lal-Chr23 3113864 3120795 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0288 K01641 - gmx:100782595 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0288 23 3113864 3120795 Lal23g0288 23 3113864 3120795 ECH