Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0887 ATGGATTTGGGTTCTAAGACCAACCAACTTTTGTCCAAGATTGCAACCAATGACAAACATGGAGAGAATTCTCCATACTTTGATGGCTGGAAGGCTTATGATAACAATCCCTTTCACCCTTCCAAAAATCCTAACGGTGTCATCCAAATGGGTCTTGCAGAAAATCAGCTATGCTTTGACTTGATTGAAGAATGGATAAAGAATAACCCCAAGGCTTCCATTTGCACCCTTGAAGGAGTTCATAAGTTCAGAGACATTGCTAACTTTCAGGACTATCATGGGCTTCCAGAGTTCAGAAATGCTTTGGCAAATTTTATGTCAAAAGTGAGAGGTGGTAATGTAAGATTTGATCCAAACAGAATAGTGATGAGTGGAGGGGCTACAGGTGCAAATGAAGTAATCATGTTTTGCTTGGCTGATCCTGGAGATGCTTTTCTTGTTCCTACTCCTTACTATCCAGCATTCCTCCGTGACTTGTGTTGGAGGACTGGGTTGCAATTAATTCCAGTTGAATGTGATAGCTCAAACAATTTCAAGATAACAAGAGAAGCTCTTGAAAAAGCTTATAACAAAGCCAAAGAGGATAATATCAATGTGAAGGGTTTGATCATAACAAACCCATCAAACCCTTTAGGCACAACATTAGATAGAGAAACATTGAAGAGCCTAATAACCTTCATCAATGAGAATAACATCCATTTAGTGTGTGATGAAATCTATGCAGCCACTGTTTTCAGTTCCCCTAGCTATGTTAGTGTCTCTGAACTCATTCAAGAAATGGATCAGCCATGCAAAAAGGACCTCATACACATTATTTATAGTTTATCTAAGGACATGGGGTTCCCTGGTTTTAGGGTTGGTATAGTTTATTCATTCAATGATGAAGTTGTTAACTGTGGAAGGAAAATGTCAAGCTTTGGATTAGTCTCCTCACAAACTCAACACATGCTTGCTTCAATGCTCTCAGATGATAGTTTTGTTGATAAGTTTCTTGCTGAGAGTAAAAAAAGGTTGGCAAAGAGGCATAACATTTTCTCAAAGGTGCTTGAAGAGGTTAACATTACAAAGTTTCCAAGCAATGCAGGACTTTTCTGCTGGATGAATTTGAAGAGTTTGTTGAAAGAACAAACATTTGAGGCTGAGATGATGCTATGGCATATGATTATCAATGAGGTGAAGCTTAATGTGTCACCAGGTTCATCCTTCAATTGTTCTGAGCCTGGTTGGTTTAGGGTTTGCTTTGCTAACATGGATGATGAGACAGTAGAAGTTGCACTTACAAGAATAAGAACATTCATTGGGAAAGAAACAAAGAAACCTGAAATGCAAGTTAAAAGTTGGCAAAGAAATCTTCAACTTAGCTTCTCCTCAATTAGAAGGTTTGTTCATGAGACTATTATGTCCCCTCACATGATGTCACCTCATTCACCAATTCCTCAATCACCCCTTGTTAAAGCTACTTGA 1464 0.3852 MDLGSKTNQLLSKIATNDKHGENSPYFDGWKAYDNNPFHPSKNPNGVIQMGLAENQLCFDLIEEWIKNNPKASICTLEGVHKFRDIANFQDYHGLPEFRNALANFMSKVRGGNVRFDPNRIVMSGGATGANEVIMFCLADPGDAFLVPTPYYPAFLRDLCWRTGLQLIPVECDSSNNFKITREALEKAYNKAKEDNINVKGLIITNPSNPLGTTLDRETLKSLITFINENNIHLVCDEIYAATVFSSPSYVSVSELIQEMDQPCKKDLIHIIYSLSKDMGFPGFRVGIVYSFNDEVVNCGRKMSSFGLVSSQTQHMLASMLSDDSFVDKFLAESKKRLAKRHNIFSKVLEEVNITKFPSNAGLFCWMNLKSLLKEQTFEAEMMLWHMIINEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVEVALTRIRTFIGKETKKPEMQVKSWQRNLQLSFSSIRRFVHETIMSPHMMSPHSPIPQSPLVKAT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 268 292 - -
Lal22g0887 487 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 300 323 - -
Lal22g0887 487 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 450 - -
Lal22g0887 487 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 7 450 - -
Lal22g0887 487 Gene3D - 70 323 IPR015421 GO:0003824
Lal22g0887 487 CDD AAT_like 88 430 - -
Lal22g0887 487 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 274 287 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lal22g0887 487 Gene3D Aspartate Aminotransferase, domain 1 36 428 IPR015422 GO:0003824
Lal22g0887 487 SUPERFAMILY PLP-dependent transferases 16 434 IPR015424 -
Lal22g0887 487 Coils Coil 175 195 - -
Lal22g0887 487 Pfam Aminotransferase class I and II 48 429 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0887 Lal-Chr22 6913505 6918072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0887 K20772 - gmx:100813347 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0887 22 6913505 6918072 Lal22g0887 22 6913505 6918072 ECH
Lal6g0993 6 7072600 7077617 Lal22g0887 22 6913505 6918072 LSH
Lal6g0993 6 7072600 7077617 Lal22g0887 22 6913505 6918072 PCT
Lal22g0887 22 6913505 6918072 Lal6g0993 6 7072600 7077617 PCT