Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal22g0800 | ATGGGTTCCAAAGTTGAAGCCACGGAAAATCCAACACTATCTCACCATAACTCACTTTCCCTCGAAAATTACGCAAACCAAGAAAACCCCGTTACTAACAACAAAGAACAAATCATTTACAACAACGATGAACAAAATTCACATTACCTTCTCCCAATTCCAATGCCTCCATCACCAACTTCAAATTCCAACTCTCAAAACGACGTCGTAGACGGCGATGCTTCTTCCACCTTCTCCGTCGTTGGAACCTTCCTCCGTCAACGCAGCAACGACCTGTCGTCTGCAATTGTTAAAAAGATCTCGTCCTTACGTCAATCCTTCGACGAAAATGAAAACGACGTGTCGTTTAGTAATAATGATAATGAGAAAAAGATAAAGCATCAAGTTACGGAGTTCAATCTCTCTGGTGTGAAGGTTGTTGTGAAAACGAAACCGGAGATGGAAGATGAAGCGTTGATGAAGGGAAGAATAAGCTTCTTCTCGAGATCGAATTGTAGAGATTGCACTGCGGTTAGGAGGTTTTTCAAGGAGAAAGGTTTACGGTTTGTGGAAATCAACATCGACGTGTTTACGGAAAGAGAAGAGGAGGTTCGACAAAGGTCGGGAACTACTACGGTGCCGCAGATTTTCTTCAACGAGAAGCTGATTGGAGGATTGGTTGCTTTGAATTCGTTGAGGAATAGCGGCGAGTTGGAGCGGAGGGTGGCGGAGATTGTGGCGGAGGATTGTCCCAGTGATGCGCCTGCGGCGCCGGTGTATGGTTTTGATTATGTGGATGATGAGGTTGATCGGACGGATGAGATTGGTGAGGTTGTTAAGATTGTACGGCAGAGATTGTCGATAAAGGATAGGTTGAAGAGGATGAAGATTGTTAAGAATTGTTTTACGGCGAATGAGTTGGTGGACGTGGTGGTTCAACACCTCGATTGCGAGCGTAGCGAGGCTGTTCAGATTGGAAAAGAGTTATGCAGGAAGCACTTCATCCATCATGTATTCGGGGAAAATGATTTTGAGGAAGGAGATCACTTGTATCGTTTCCTTGAACATGAACCGTTTAGCCCAAGATGCTTCAATTTCCGTGCCACTAATGATAATGAACCAAAGGCTGCAGCTTCAGTTTTCGAAAGGCTTGCAAAGATTATGTCTGCCATTCTTGAGTCTTATGCTTCTTATGACATGCAACATATTGATTATGAGGCCATTAGCAAAAGCGAAGAATTTCGTAGATATGTAAATATGACTCGGGATCTGCAACGAGTTAATCTCTTAGAGCTATCAGAAAACGAGAAGCTTGCATTCTTCTTAAATTTGTACAATGCTATGGTCATCCATGCTATAATTAGAGTAGGGTGTCCAGAAGGTGTAATTGATAGAAGATCTTTCTTCACTGATTTCCAGTATTTGGTGGGAGGATACCCTTATTCTCTCTCTACTATTAAAAATGGTATCCTCAGATGCAATCGAAGGTCACCATATTCCTTAGTCAAGCCTTTTAGCACAGGGGACAGACAGTTAGAGGTTGCTCTTGTAAAAATGAACCCATTATTTCACTTTGGACTCTGTAATGGTACAAAGTCCAGCCCAAGGGTGAGGTTTTTCTGTCCCCAAAGAGTTGCAGATGAATTAAGAGTTGCTGCAAGAGAGTTCTTTGAGAATGGTGGAATTGAAGTGGACCTAGAGAAGAGAACTGTTTATCTCACAAGGATTTTTAAGTGCAATGGCGCCGAAGCGAAGGCTTCCGTTTGCAAAGAAAAGAAGCAAAAGATCTCATTTCCCCGTTCTGTTTTTCTTTCTCCTCTGCGTTCTTGCGGCAGCGGTTTTCTTCATAGGCTGCGGAGTCTATGTAGTTTGAGATATGATATGTTTCTTGATCTGGCATCTAGGGACATATATGATTGCATAAGATATCAAGGTGATACTCGAGCTGTTCCAAGTAAAAAGGTTCTTGATGTTATTGTATCCAGCACAACTGATACGGGGCCTTTGAGTCTTGACAATTTCAGAAAGAATAATTTGTCTGCTTCATGGAGACTTGCTGGATTAGAAACATCAAATGCTACATATGAGCTAAACCAGCCAACAACGCATGCTAGACAAGAGAAACCAAATCAGAAGGAAGACAAATCTTCAGGTGATGGCCGTGCTCAGTGGAGTAATAGTCCTACTCAGCAAGCCCGAAGGCAATTAATAGAGAAAAGGCAAGAAAAACGTGCTGCTGAGTTGGTAAAACTGGATGATGGAGTGATTGTTAAACTTGAAAATGCAGCTATTGAACGCTCACAATCAGTGGAGTCAGCCGTTCTGGGTAAATACAGCATTTGGAGGAAAGAAATGGAGAATGAAAATGCTGATTCTACTGTTCGGTTGATGCAGGACCAGATCATTATGGCTAGGGTATATTTGAGTATTGCCAAGTTGAAGAACAAGCTTGAACTGTACCAAGAACTGCAATCTCGGTTGAAAGAGAGTCCACGTGTTTTAGGTGATGCAAGTTCTGATGCAGATCTACAGCACAGTGCACATGAAAAAATGAAGGCTATGGGTCAAGTTCTGTCAAAAGCAAGAGAGCAATTATATGACTGCAAGTTGGTCACTGGAAAACTGAGGGCAATGCTACAAACAGCTGATGAGCAGGTTAGGAGCATGAAGAAACAAAGCACATTCCTCAGTCAGTTGGCGGCCAAGACGATACCAAATGGAATTCATTGCTTATCAATGCGCCTTACTATAGATTACAACCTCCTTCCTTTTGAAAAGAGAAAGTTCCATATGAGTGAGAACTTGGAGAATCCCAGTCTTTATCATTACGCATTGTTTTCAGACAATGTCTTGGCTGCATCTGTGGTTGTCAACTCAACTATTATGAATGCAAAGGATCCTTCCATGCATGTTTTTCATCTAGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTCTGTTGAACCCTCCTGGGAAAGCTACAATCCATGTTGAAAATGTTGATGATTTTAAGTGGTTGAACTCATCCTACTGTCCGGTCTTGCGGCAGCTTGAATCTGCAACAATGAAAGAATATTATTTCAAGTCAGGACATTCAACCTCCCTTTCCTCTGGTGCTTCTAATCTGAAGTACAGAAACCCAAAATATCTCTCAATGCTCAATCATCTGAGATTCTATCTTCCTCAAGTTTATCCAAAATTGGATAAAATCCTTTTCCTTGATGATGACATTGTTGTTCAGAAGGATTTGACTGGATTGTGGGATGTGAATCTTAATGGGAAAGTAAATGGTGCTGTTGAAACATGTGGTGAGAGCTTTCACCGATTTGACAAGTACCTTAACTTCTCAAATCCACATATTGCAAGAAATTTTGATCCAAATGCTTGTGGTTGGGCATACGGGATGAACATATTTGATTTGAAGGAGTGGAAAAAGAAGGATATCACTGGCATATATCACAAATGGCAGAATATGAATGAAGACCGGGTGCTGTGGAAGCTGGGAACATTACCCCCAGGGCTAATAACATTCTATGGGCTGACACATCCTTTAAATAAATTATGGCATGTACTTGGTTTGGGTTATAATCCAAGTGTTGGTCGATTAGAGATCGAGAATGCTGCAGTTGTACACTACAATGGCAATATGAAGCCATGGTTAGAGATTGCCATGACAAAGTATCGGTCTTACTGGACCAAATATGTCAAGTATGATCATCCTTATCTTCAGAACTGTAAGCTAAATGAATAG | 3738 | 0.4147 | MGSKVEATENPTLSHHNSLSLENYANQENPVTNNKEQIIYNNDEQNSHYLLPIPMPPSPTSNSNSQNDVVDGDASSTFSVVGTFLRQRSNDLSSAIVKKISSLRQSFDENENDVSFSNNDNEKKIKHQVTEFNLSGVKVVVKTKPEMEDEALMKGRISFFSRSNCRDCTAVRRFFKEKGLRFVEINIDVFTEREEEVRQRSGTTTVPQIFFNEKLIGGLVALNSLRNSGELERRVAEIVAEDCPSDAPAAPVYGFDYVDDEVDRTDEIGEVVKIVRQRLSIKDRLKRMKIVKNCFTANELVDVVVQHLDCERSEAVQIGKELCRKHFIHHVFGENDFEEGDHLYRFLEHEPFSPRCFNFRATNDNEPKAAASVFERLAKIMSAILESYASYDMQHIDYEAISKSEEFRRYVNMTRDLQRVNLLELSENEKLAFFLNLYNAMVIHAIIRVGCPEGVIDRRSFFTDFQYLVGGYPYSLSTIKNGILRCNRRSPYSLVKPFSTGDRQLEVALVKMNPLFHFGLCNGTKSSPRVRFFCPQRVADELRVAAREFFENGGIEVDLEKRTVYLTRIFKCNGAEAKASVCKEKKQKISFPRSVFLSPLRSCGSGFLHRLRSLCSLRYDMFLDLASRDIYDCIRYQGDTRAVPSKKVLDVIVSSTTDTGPLSLDNFRKNNLSASWRLAGLETSNATYELNQPTTHARQEKPNQKEDKSSGDGRAQWSNSPTQQARRQLIEKRQEKRAAELVKLDDGVIVKLENAAIERSQSVESAVLGKYSIWRKEMENENADSTVRLMQDQIIMARVYLSIAKLKNKLELYQELQSRLKESPRVLGDASSDADLQHSAHEKMKAMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSMKKQSTFLSQLAAKTIPNGIHCLSMRLTIDYNLLPFEKRKFHMSENLENPSLYHYALFSDNVLAASVVVNSTIMNAKDPSMHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDDFKWLNSSYCPVLRQLESATMKEYYFKSGHSTSLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLDKILFLDDDIVVQKDLTGLWDVNLNGKVNGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKEWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYGLTHPLNKLWHVLGLGYNPSVGRLEIENAAVVHYNGNMKPWLEIAMTKYRSYWTKYVKYDHPYLQNCKLNE | 1245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal22g0800 | 1245 | Pfam | Protein of unknown function, DUF547 | 424 | 549 | IPR006869 | - | |
| Lal22g0800 | 1245 | Pfam | Glycosyl transferase family 8 | 903 | 1219 | IPR002495 | GO:0016757 | |
| Lal22g0800 | 1245 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 934 | 1243 | IPR029044 | - | |
| Lal22g0800 | 1245 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Lal22g0800 | 1245 | CDD | GT8_like_1 | 934 | 1232 | - | - | |
| Lal22g0800 | 1245 | PANTHER | GALACTURONOSYLTRANSFERASE 4-RELATED | 613 | 1245 | IPR029993 | GO:0047262 | |
| Lal22g0800 | 1245 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
| Lal22g0800 | 1245 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 936 | 1239 | IPR029044 | - | |
| Lal22g0800 | 1245 | MobiDBLite | consensus disorder prediction | 713 | 727 | - | - | |
| Lal22g0800 | 1245 | Gene3D | - | 263 | 398 | IPR036388 | - | |
| Lal22g0800 | 1245 | SUPERFAMILY | "Winged helix" DNA-binding domain | 266 | 361 | IPR036390 | - | |
| Lal22g0800 | 1245 | MobiDBLite | consensus disorder prediction | 687 | 732 | - | - | |
| Lal22g0800 | 1245 | ProSiteProfiles | DEP domain profile. | 275 | 348 | IPR000591 | GO:0035556 | |
| Lal22g0800 | 1245 | CDD | DEP | 276 | 345 | - | - | |
| Lal22g0800 | 1245 | SUPERFAMILY | Thioredoxin-like | 150 | 236 | IPR036249 | - | |
| Lal22g0800 | 1245 | Coils | Coil | 803 | 823 | - | - | |
| Lal22g0800 | 1245 | Gene3D | Glutaredoxin | 153 | 238 | - | - | |
| Lal22g0800 | 1245 | PANTHER | HEXOSYLTRANSFERASE | 613 | 1245 | - | - | |
| Lal22g0800 | 1245 | Pfam | Glutaredoxin | 159 | 216 | IPR002109 | - | |
| Lal22g0800 | 1245 | SMART | DEP_3 | 275 | 348 | IPR000591 | GO:0035556 | |
| Lal22g0800 | 1245 | Pfam | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | 279 | 346 | IPR000591 | GO:0035556 | |
| Lal22g0800 | 1245 | ProSiteProfiles | Glutaredoxin domain profile. | 145 | 242 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal22g0800 | Lal-Chr22 | 5881780 | 5896885 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal22g0800 | 640 | 1245 | Glycosyltransferase | AT3G61130 | 78.713 | 0.0 | 996 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal22g0800 | K13648 | - | gmx:100798073 | 1040.02 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal22g0800 | 22 | 5881780 | 5896885 | Lal22g0800 | 22 | 5881780 | 5896885 | ECH |