Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0787 ATGGAAGAAGAGAAGAGAGATGAAAGAATATGGAGTTGGGGTGCTGGAACTGAAGGACAGTTAGGAACAAACAACCTTCAAGATCAACATCTCCCTCAACTCATTCACCAACCTTCTCTCTCTTCCGTCTCCCACCTTGCCTGCGGCGGCGCTCACGTCCTCGCCTTAACCTCCGGTGGGAAGGTAGTGTCCTGGGGCAGGGGCAATTCTGGCCAACTAGGACAGGGAGAGGTTGTTAACAATTCCTTGTATCCTAAGATTGTAACATCCTTGGATGCCTACTTCATAACCCATGTCTCTGCTGGTTGGAGCCACTCAGCTTTTGTTTCAGATAATGGGTGCTTGTTCACTTGTGGAGATGGCTCTTTTGGTCAGCTTGGACATGGGGATTACACCTCACACTGCACCCCTTTGAAAGTATCGTTCTTTGCTAATCAGCATGTTGCACAGGTAGCTTGCGGCATGCGCCACTCCCTTGTCTTGTTAAAAGTCACGAAAAAAAGTCATTGGGATGCAGATGGTTCACAAAATCAAATTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTAGGTGTCTCCAAAGATAAGATCAAATCTATTAATCTTCCTCAAGTTATTAGTGCTTTTGGAGATGCTGAAATTGTTCAAATTGCTGCAAATGGAGATCATAGTGCTGCTTTGTCCGTTGATGGGCATCTTTACACCTGGGGAAGAGGCTTCAAAGGATTTGAAGATGTTCACTCTCCACAACGCCTGAAATCTTCTTTGAATTTTAGCAAGGCCACTTTGGGGTGGAACCATGCTTTAGCTTTGACCGGTGAGGGAGAGGTTTATATGCTTGGTGGCAACCACCTTGGAGTGCTTAGTAATCATCAGAGTATGAACCGACCAAAGCAGATACCTGTAGATTCCAGAGAAGCCAATTTGGAGAAAGTCCCTGGCCTTGATGGGATAAAGATTGCCGATATTGCTACCGGATCTGAGCACTCGGTCGTTGTCACAGGCAAGATATAG 1014 0.4625 MEEEKRDERIWSWGAGTEGQLGTNNLQDQHLPQLIHQPSLSSVSHLACGGAHVLALTSGGKVVSWGRGNSGQLGQGEVVNNSLYPKIVTSLDAYFITHVSAGWSHSAFVSDNGCLFTCGDGSFGQLGHGDYTSHCTPLKVSFFANQHVAQVACGMRHSLVLLKVTKKSHWDADGSQNQIYGFGSGKRGQLGVSKDKIKSINLPQVISAFGDAEIVQIAANGDHSAALSVDGHLYTWGRGFKGFEDVHSPQRLKSSLNFSKATLGWNHALALTGEGEVYMLGGNHLGVLSNHQSMNRPKQIPVDSREANLEKVPGLDGIKIADIATGSEHSVVVTGKI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0787 337 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 334 - -
Lal22g0787 337 Pfam Regulator of chromosome condensation (RCC1) repeat 112 161 IPR000408 -
Lal22g0787 337 Pfam Regulator of chromosome condensation (RCC1) repeat 7 56 IPR000408 -
Lal22g0787 337 Pfam Regulator of chromosome condensation (RCC1) repeat 178 227 IPR000408 -
Lal22g0787 337 Pfam Regulator of chromosome condensation (RCC1) repeat 60 109 IPR000408 -
Lal22g0787 337 Gene3D - 165 336 IPR009091 -
Lal22g0787 337 SUPERFAMILY RCC1/BLIP-II 6 334 IPR009091 -
Lal22g0787 337 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 99 109 IPR000408 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 231 274 IPR000408 -
Lal22g0787 337 Gene3D - 5 164 IPR009091 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 177 230 IPR000408 -
Lal22g0787 337 PANTHER OS01G0777800 PROTEIN 10 334 - -
Lal22g0787 337 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 151 161 IPR000408 -
Lal22g0787 337 PRINTS Chromosome condensation regulator RCC1 signature 10 26 IPR000408 -
Lal22g0787 337 PRINTS Chromosome condensation regulator RCC1 signature 60 76 IPR000408 -
Lal22g0787 337 PRINTS Chromosome condensation regulator RCC1 signature 99 115 IPR000408 -
Lal22g0787 337 PRINTS Chromosome condensation regulator RCC1 signature 115 129 IPR000408 -
Lal22g0787 337 PRINTS Chromosome condensation regulator RCC1 signature 220 238 IPR000408 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 275 336 IPR000408 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 8 59 IPR000408 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 60 112 IPR000408 -
Lal22g0787 337 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 113 164 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0787 Lal-Chr22 5767519 5770815 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0787 - - gmx:100793672 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0787 22 5767519 5770815 Lal22g0787 22 5767519 5770815 ECH