Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0751 ATGGCAGCACCCATTCTCCATTTCACTTCACTTTCTCCCACTCAACCCAACAACACTGAAACCCCAAGAAATGAAGTCTCCACCACTACGTTTGCACCTTCCCTCATACCCAAATGCACCTCTCTCAAAGAGCTTAAGCAAATTCATGCTTACACAATCAAAACTCATCTCCAAAATGACCTCACTGTCCTCACCAAGCTCATCAATTTCTGCACAAATAACCCAACAAAATCTTCCATGGATTATGCCCACCACATGTTTGACCAAATTACTCAACCAGACATTGTCCTTTTCAACACCATGGCTCGTGGGTATGCAAGGTTCGATAACCCACTAAGAGCCATTACGTTGTTTTCTCAAGTGTTATCATATGGCCTCCTTCCAGATGATTACACTTTTTCGTCCCTTCTCAAGGCTTGTGCAAGGGTTAAGGCCTTGCAGGAAGGTAAACAATTGCATTGCCTTTCTGTGAAACTTGGGGTCAGTGTTAACATGTATGTTTGTCCAACGCTCATAAATATGTACACTGCATGTAATGACATAGATGCCGCTAGAAGGGTCTTTGATAAGATTGATGAACCGTGTGTTGTTTCGTATAATGCAATCATTACAAGTCATGCACGAAATAGTCAGCCCAACGAAGCCTTGGCTTTGTTCAGAGAATTGCAGGAGACCGGTCTTACACCAACTGATGTCACAATGCTTGTTGCGCTTTCATCTTGTGCTTTGTTGGGAGCGTTGGACTTAGGGAGGTGGATACATGAGTATGTTAAGAAGAATGGGTTTGATCAATATGTGAAGGTGAACACTGCACTTATAGATATGTATGCAAAATGTGGGAGTTTGGATGATGCAATTTCTGTATTTAGGGAAATGCGTCGGAAAGACACACAGGCTTGGTCAGCGATGATTGTTGCTTATGCAACTCATGGGGATGGTCCCCAAGCCATATTAATGTTGGGAGAAATGAAGAAGGCGAAAGTGCAGCCTGATGACATAACTTTTTTAGGTATACTGTATGCATGCAGTCACAACGGATTGGTAGAGGAAGGTTATCAGTTCTTCCATAGTATGACTCATGAGTATGGGATTGTTCCTAGTGTCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGACGCTTGGATGAAGCTTATAAGTTCATAGACGAATTACCAATTAAGCCCACACCGATTCTGTGGCGTACATTGCTATCTGCCTGTACTAGTCATGGCAATATTGAAATGGGAAAGCAAGTCATTCAGAGAATCTTTGAACTGGATGATTCTCATGGTGGGGATTATGTTATTTTGTCAAACTTGTTAGCAAAATCTGGAAGATGGGATGATGTGAATTTCCTAAGGAAAATGATGATGGATAAAGGAGCAGTAAAAGTTCCTGGCTGTAGCTCTATAGAGGTTAACAATGTTGTGCATGAATTCTTCTCCGGGGATGGAGTTCATTCTGCTTCTACCGGATTGCACCATGCACTTGATGAATTGGTAAAGGAATTAAAGCTGGCTGGATATGTAGCTGACACATCTCTAGTCTTTCATGCAGACATACAAGATGAAGAGAAAGAAATTATTCTTAGATATCACAGTGAGAAATTGGCCATTACTTTTGGGCTTCTGAATACTCCTCCTGGAACAACAATTCGGGTGGTCAAGAATCTTCGAGTCTGTGCGGATTGCCATAGTGCTGCTAAATTTATATCATTGATCTTTGGTAGGCAAATTATTCTTCGGGATGTCCAGCGCTTTCATCATTTCAAAGATGGGAAATGCTCCTGTGGGGATTACTGGTAG 1815 0.4204 MAAPILHFTSLSPTQPNNTETPRNEVSTTTFAPSLIPKCTSLKELKQIHAYTIKTHLQNDLTVLTKLINFCTNNPTKSSMDYAHHMFDQITQPDIVLFNTMARGYARFDNPLRAITLFSQVLSYGLLPDDYTFSSLLKACARVKALQEGKQLHCLSVKLGVSVNMYVCPTLINMYTACNDIDAARRVFDKIDEPCVVSYNAIITSHARNSQPNEALALFRELQETGLTPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAISVFREMRRKDTQAWSAMIVAYATHGDGPQAILMLGEMKKAKVQPDDITFLGILYACSHNGLVEEGYQFFHSMTHEYGIVPSVKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACTSHGNIEMGKQVIQRIFELDDSHGGDYVILSNLLAKSGRWDDVNFLRKMMMDKGAVKVPGCSSIEVNNVVHEFFSGDGVHSASTGLHHALDELVKELKLAGYVADTSLVFHADIQDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCADCHSAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0751 604 Gene3D Tetratricopeptide repeat domain 37 174 IPR011990 GO:0005515
Lal22g0751 604 Gene3D Tetratricopeptide repeat domain 175 267 IPR011990 GO:0005515
Lal22g0751 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Lal22g0751 604 Gene3D Tetratricopeptide repeat domain 268 506 IPR011990 GO:0005515
Lal22g0751 604 Pfam PPR repeat family 194 241 IPR002885 -
Lal22g0751 604 Pfam PPR repeat family 93 142 IPR002885 -
Lal22g0751 604 Pfam PPR repeat 270 295 IPR002885 -
Lal22g0751 604 Pfam PPR repeat 299 326 IPR002885 -
Lal22g0751 604 Pfam PPR repeat 334 359 IPR002885 -
Lal22g0751 604 SUPERFAMILY TPR-like 255 434 IPR011990 GO:0005515
Lal22g0751 604 Pfam E motif 413 475 IPR046848 -
Lal22g0751 604 TIGRFAM PPR: pentatricopeptide repeat domain 270 296 IPR002885 -
Lal22g0751 604 TIGRFAM PPR: pentatricopeptide repeat domain 334 368 IPR002885 -
Lal22g0751 604 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Lal22g0751 604 TIGRFAM PPR: pentatricopeptide repeat domain 299 331 IPR002885 -
Lal22g0751 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Lal22g0751 604 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 590 - -
Lal22g0751 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Lal22g0751 604 Pfam PPR repeat 363 393 IPR002885 -
Lal22g0751 604 PANTHER BNAA02G26650D PROTEIN 28 590 - -
Lal22g0751 604 MobiDBLite consensus disorder prediction 1 26 - -
Lal22g0751 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Lal22g0751 604 Pfam DYW family of nucleic acid deaminases 511 604 IPR032867 GO:0008270
Lal22g0751 604 MobiDBLite consensus disorder prediction 8 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0751 Lal-Chr22 5377903 5379717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0751 34 604 Glycoside Hydrolase AT3G49170 38.687 4.84e-141 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0751 - - gmx:100817794 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0751 22 5377903 5379717 Lal22g0751 22 5377903 5379717 ECH