Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0583 ATGCCTCTAAGAACCCCTTCAATTCTTTATGTAATATCAGATACAAAGCATCTTTCTTCAACTTCATTTTCCTCATCAAAATTATCTCTTTCTATTTTGGATAGCTTGGGTGAGTTAAGGACTTTGAATTCTGTTAGGGAATTGCATGCCCAGATGTTGAAATTGCCAAAAAATGGGAACTTGGCTACAATGGATGCAAGCTTGATTAGATACTATTTGGAATTTGGAGATTTTGTGTCAGCAATAGAGGTATTCTTTGTTGGTTTTACAAGGAATTATCTTATCTGGAATTCTTTTCTTGAGGAATTTGCTAGTTTTAGAGGTAACCCAAATGTGATATTGAAGGTATTTAAAGAATTGAATAGAAAAGGAGTGAACTTTGATAGCAAAGCTTTAACTGTTGTGCTGAAAATTTGCTTGACTTTAATGGATTTGTGGGTTGGTTTGGAGATCCATGCTTGTTTGATCAAAAGAGGGTTCCATTTTGATGTGCATTTGAGTTGTGCATTGATCAATTTGTATGAGAAGTGTTGGGGTATAGATAAGGCCAATCAAGTATTTCATGAGACCCCATATCAAGAAGATTTTTTGTGGAATACAGTACTTATAGCCAACCTGAGGAGTGAGAGGTGGTGGAATGCCTTGGAACTGTTTCACGGCATGCAGTTATCATCTGCCAAAGCCACTGGTGGCACCATTGTGAAGATGATGCAAGCATGTGGAAAATTAAGAGCTCTCAATGAAGGGAAGCAGATTCATGGGTATGTTTTGAGATTTGGACTTTTGTCAAATATTTCAATTTCCAATTCCATAATTAGCATGTACTCTAGAAACAATAGACTCAGACAAGCCAGAGCAGTTTTTGATTCAATGGATGATCATAACTTGTCATCTTGGAACTCAATAATTTCAAGTTATGCTGTTGATGGCTGTTTGAATGAGGCCTGGGATATGTTCCAAGAAATGGAGTCTTCCAGCATTAAACCAGACATTATAACTTGGAATTCTCTTCTGTCAGGCCATTTTCTTCAGGGCTCATATGAAATGGTCCTGACCAATTTCCGAAGCCTGCAAAGTGCAGGATTCAAGCCAGATTCATGCTCGGTAACCAGTGCTCTACAAGCAGTTATTGAATTGGATTTGTTTAACTATGGGAAAGAAATCCATGGTTATATAATGAGAAATAAGCTTGACTATGATGTCTATGTTTGTACTTCATTGGTGGATATGTATATCAAGAATGATCGTTTATATAAAGCTGAAGCAGTGTTCCGCCATACAAAGAACAAAAATGTTTGTGCTTGGAATTCTTTGATATCAGGGTACTGCTTCAAGGGCCTGTTTAGCAATGCTGAAACACTATTGAACCAGATGGAGAAAGAAGGAATAAAACCTGATTTGGTGACATGGAACAGTTTGGTTTCAGGTTATTCAATGTGGGGCCGCAGCGAAGAAGCTTTGGCTGTGATTAATCGGATGAAGAGCTTGGGATTTACTCTTAATGTAGTATCCTGGACAGCTATGATATCAGGCTGTTCTCAGAATGAGAACTATCGGGATGCCCTACAGTTTTTTGTCCAAATGCAAGAAGAAAATGTAAAACCTAACTCTACCACCATTTGCAGCTTACTTCGTGCATGTGCAGGTCCGTCACTGTTAAAGAAAGGAGAAGAGATACACTGCTTCAGTATAAGACTTGGATTTGTGGATGATATATATTTAGTCACAGCCCTCATTGACATGTATAGTAAGGGAGGAAATTTAAAAGTAGCCCATGAAGTTTTCAATAGAATTCAGGAAAAAACACTGCCATGTTGGAATTGCATTTTGATGGGATATGCCCTTCATGGCCATGGAGAAGAGGTAATGATTCTTTTTGACAACATGTGCGAATCAGACATCAGACCAGATGCGATAACCTTCACAGCTCTTCTATCCGGCTGCAAAAGTTCGGGTTTAGTTGATGAAGGGTGGAAGTACTTTGACTGTATGAAGACAGATTACAACATTATTCCAACAATTGAACACTACTCTTGCATGGTAGACCTTCTTGGAAAAGCTGGTTTTCTCGACGAAGCTATAGATTTCATACAAAATATGCCAATAAAGGCAGATGCCAGTATTTGGGGTGCTCTTCTTGCATGCTGTAGAATTCACAGAGATATTAAGCTAGCAGAGATTGCAGCAAGGAAACTTTTCAAGTTGGAACCATATAATTCCGCTAACTATGTGTTGATGATGAATATATATTCGAGTTTAAACCGATGGGAGGATGTGGAGCGCCTTAAAGATAAAATGACTGCCTTGGGGATCAAAAGCCCTCATGTATGGAGCTGGATACAAGTTAATCAGTCTGTTCATGTGTTTTCCACAGAAGGGAAATCACATCCTGAAGAAGGGGAAATATATTTCGAGTTGTTTCAGTTAATTTCTGAAATACGAAAGCTAGGATACATACCTGACATTAATTTTGTTTATCAGAACATTGACGACAAAGAGAAGGAGAAGGTTCTGCTAAGTCACACCGAGAAGTTGGCTATGGCTTATGGACTGATGAAAACAAAAAGTGGGTCACCTATCAGAGTAGTTAAGAACACAAGAATTTGTCATGACTGTCATACAGCAGCAAAGTACATTTCCTTGGCTCGAAATCGCGAGATTTTCCTTAGAGATGGTGGTCGTTTTCACCACTTTATGAATGGAAAGTGCTCCTGCAATGATTGTTGGTAA 2730 0.3853 MPLRTPSILYVISDTKHLSSTSFSSSKLSLSILDSLGELRTLNSVRELHAQMLKLPKNGNLATMDASLIRYYLEFGDFVSAIEVFFVGFTRNYLIWNSFLEEFASFRGNPNVILKVFKELNRKGVNFDSKALTVVLKICLTLMDLWVGLEIHACLIKRGFHFDVHLSCALINLYEKCWGIDKANQVFHETPYQEDFLWNTVLIANLRSERWWNALELFHGMQLSSAKATGGTIVKMMQACGKLRALNEGKQIHGYVLRFGLLSNISISNSIISMYSRNNRLRQARAVFDSMDDHNLSSWNSIISSYAVDGCLNEAWDMFQEMESSSIKPDIITWNSLLSGHFLQGSYEMVLTNFRSLQSAGFKPDSCSVTSALQAVIELDLFNYGKEIHGYIMRNKLDYDVYVCTSLVDMYIKNDRLYKAEAVFRHTKNKNVCAWNSLISGYCFKGLFSNAETLLNQMEKEGIKPDLVTWNSLVSGYSMWGRSEEALAVINRMKSLGFTLNVVSWTAMISGCSQNENYRDALQFFVQMQEENVKPNSTTICSLLRACAGPSLLKKGEEIHCFSIRLGFVDDIYLVTALIDMYSKGGNLKVAHEVFNRIQEKTLPCWNCILMGYALHGHGEEVMILFDNMCESDIRPDAITFTALLSGCKSSGLVDEGWKYFDCMKTDYNIIPTIEHYSCMVDLLGKAGFLDEAIDFIQNMPIKADASIWGALLACCRIHRDIKLAEIAARKLFKLEPYNSANYVLMMNIYSSLNRWEDVERLKDKMTALGIKSPHVWSWIQVNQSVHVFSTEGKSHPEEGEIYFELFQLISEIRKLGYIPDINFVYQNIDDKEKEKVLLSHTEKLAMAYGLMKTKSGSPIRVVKNTRICHDCHTAAKYISLARNREIFLRDGGRFHHFMNGKCSCNDCW 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0583 909 Gene3D Tetratricopeptide repeat domain 575 881 IPR011990 GO:0005515
Lal22g0583 909 Gene3D Tetratricopeptide repeat domain 102 244 IPR011990 GO:0005515
Lal22g0583 909 Gene3D Tetratricopeptide repeat domain 430 561 IPR011990 GO:0005515
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lal22g0583 909 Pfam PPR repeat family 605 648 IPR002885 -
Lal22g0583 909 Pfam PPR repeat family 295 340 IPR002885 -
Lal22g0583 909 Pfam PPR repeat family 501 548 IPR002885 -
Lal22g0583 909 Pfam PPR repeat family 430 477 IPR002885 -
Lal22g0583 909 PANTHER OS05G0586900 PROTEIN 192 897 - -
Lal22g0583 909 PANTHER OS05G0586900 PROTEIN 114 189 - -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Lal22g0583 909 Pfam PPR repeat 676 700 IPR002885 -
Lal22g0583 909 Pfam PPR repeat 576 601 IPR002885 -
Lal22g0583 909 Pfam PPR repeat 197 222 IPR002885 -
Lal22g0583 909 Gene3D Tetratricopeptide repeat domain 266 387 IPR011990 GO:0005515
Lal22g0583 909 Pfam E motif 719 781 IPR046848 -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 637 667 IPR002885 -
Lal22g0583 909 SUPERFAMILY TPR-like 276 758 IPR011990 GO:0005515
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Lal22g0583 909 Pfam DYW family of nucleic acid deaminases 817 909 IPR032867 GO:0008270
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 269 295 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 605 638 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 434 466 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 332 366 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Lal22g0583 909 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
Lal22g0583 909 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 192 897 - -
Lal22g0583 909 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 114 189 - -
Lal22g0583 909 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0583 Lal-Chr22 4050556 4053285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0583 120 909 Glycoside Hydrolase AT3G49170 31.071 6.95e-133 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0583 - - gmx:100796795 1470.68