Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0565 ATGAACCAAGTGAAGCAAATCCATGCTTACACAGTGAGAAATGGCATAGACCAAACCAAAATTCTGATAGAGAAGTTACTTCAAATCCCAAACCTCCAATATGCACATCTTCTCTTTCACCACTCACCCAACCCAAATGTTTATCTTTACAATAAAATCATTCAAGCCTATTCATCTTCCTCCAATTCCCAACATCAATGCTTCTCCCTTTACTCCCAAATGCGCCTTCATGGTTTCCCTCCAAATCAACACACTTTCAACTTTCTCTTCTCTGCATGTACCTCCCTTTGCTCTCTTCCCCTTGCCCAATTCCTTCATACCCATTTTGTCAAATCAGGTTTTCAACCTGACCTCTTTGCTGCCACTGCTTTGCTTGACATGTATGCGAAACTGGGTACTTTGGAGTTTGCACGCAAGGTGTTTGATGAAATGGGTAAAAGAGAAATACCCTCTTGGAATGCTATGATTGCGGGGTACGCAAGGGTTGGAGATATGGAGGAAGCGTTGGAGTTGTTTAAGTTGATGCCTTGTAGGAATGTTGTGTCATGGACTGCCATGATATCTGGTTACTCGCGTAGCAAACAATATGAGAAGGCTATGGGGTTGTTCCTGAGGTTGGAAAGGTTGAGAGACATTAGGCCCAATGAAGTAACCCTGGCAAGCATTTTGCCAGCTTGTGCAAATCTTGGGGCACTGGAGATTGGGCAGAGGATTGAAGAGTACGCGAGAAAAAATGGGTTCTTTAAGAATTTGTATGTTGGCAATGCTGTGTTGGAGATGTATGCAAAATGTGGTAATATTGATGTTGCTTGGAGAGTGTTTGATGAGATTGGCACATTGAGAAACGTGTGCTCTTGGAATTCAATGATCATGGGCTTGGCTGTCCACGGTCAATGCAGCAAAGCCCTTGAGCTTTATGATCAAATGATGAGAGAAGGAACTTCACCTGATGATGTGACATTTGTAGGGCTCCTCTTGGCATGCACACATGGAGGTATGGTTGTAAAAGGCAGGCATATCTTCAAGTCAATGACAACCGATTTCCACATTATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTCCTAGGACGTGCTGCGAAATTAAGAGAAGCTTATGAGGTCATTCAAGGTATGCCCATGAAACCAGACTCAGTAATATGGGGGGCTCTTTTGGGAGCTTGCAGCTTCCATGGTAATGTCAAGATAGCTGAGATAGCAGCCGAGTCACTGTTTGTACTCGAACCTTGGAATCCAGGAAATTATGTCATTCTTTCCAACATTTATGCGTCAGTTGGAAAATGGGATGGAGTTGCAAAGCTCAGGAAGGTGATGAAGGGCAGTCAAATTACAAAGACAGCTGGACATAGTTTCATTGAAGAGAGGGGCCAATTGCATAAGTTCATTGTGGATGATAGATCACATCCACAAAGCAGTGAAATTTTTGCATTGCTTGATGGAGTTTATGAACTAATAAAGCTTAATAGAAGTTCATTTGAATGCCATTTGGATCTTGATTTGAGCTACTAA 1533 0.426 MNQVKQIHAYTVRNGIDQTKILIEKLLQIPNLQYAHLLFHHSPNPNVYLYNKIIQAYSSSSNSQHQCFSLYSQMRLHGFPPNQHTFNFLFSACTSLCSLPLAQFLHTHFVKSGFQPDLFAATALLDMYAKLGTLEFARKVFDEMGKREIPSWNAMIAGYARVGDMEEALELFKLMPCRNVVSWTAMISGYSRSKQYEKAMGLFLRLERLRDIRPNEVTLASILPACANLGALEIGQRIEEYARKNGFFKNLYVGNAVLEMYAKCGNIDVAWRVFDEIGTLRNVCSWNSMIMGLAVHGQCSKALELYDQMMREGTSPDDVTFVGLLLACTHGGMVVKGRHIFKSMTTDFHIIPKLEHYGCMVDLLGRAAKLREAYEVIQGMPMKPDSVIWGALLGACSFHGNVKIAEIAAESLFVLEPWNPGNYVILSNIYASVGKWDGVAKLRKVMKGSQITKTAGHSFIEERGQLHKFIVDDRSHPQSSEIFALLDGVYELIKLNRSSFECHLDLDLSY 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0565 510 Pfam Pentatricopeptide repeat domain 110 149 IPR002885 -
Lal22g0565 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 147 IPR002885 -
Lal22g0565 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Lal22g0565 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lal22g0565 510 Pfam PPR repeat 181 208 IPR002885 -
Lal22g0565 510 Pfam PPR repeat 151 179 IPR002885 -
Lal22g0565 510 Pfam PPR repeat 255 277 IPR002885 -
Lal22g0565 510 PANTHER OS06G0125600 PROTEIN 2 461 - -
Lal22g0565 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 46 81 IPR002885 -
Lal22g0565 510 Pfam PPR repeat family 45 93 IPR002885 -
Lal22g0565 510 Pfam PPR repeat family 281 328 IPR002885 -
Lal22g0565 510 Gene3D Tetratricopeptide repeat domain 255 481 IPR011990 GO:0005515
Lal22g0565 510 Gene3D Tetratricopeptide repeat domain 18 148 IPR011990 GO:0005515
Lal22g0565 510 Gene3D Tetratricopeptide repeat domain 149 247 IPR011990 GO:0005515
Lal22g0565 510 TIGRFAM PPR: pentatricopeptide repeat domain 151 180 IPR002885 -
Lal22g0565 510 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Lal22g0565 510 TIGRFAM PPR: pentatricopeptide repeat domain 181 216 IPR002885 -
Lal22g0565 510 Pfam E motif 399 461 IPR046848 -
Lal22g0565 510 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0565 Lal-Chr22 3856180 3858272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0565 5 494 Glycoside Hydrolase AT3G49170 33.065 3.63e-87 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0565 - - gmx:100790321 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0565 22 3856180 3858272 Lal22g0565 22 3856180 3858272 ECH