Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0546 ATGGCAACAGTGACTGCTTCAAGCAACTTAGTCTACAGAAATTCTCAGCTCCATTATGGACCAACTATCTCATATGAACCTAAAACTGCACCAATGAGACTTCAATATCAAAATCAAATCAATACTCATAATGGACTTAGAATTTTGAACATAGTGGATGTACTGCAAAATAGAACACCAATCAAAGTTAATTCAGCACAAGCTACGAAGAAAAGACTTCAAAGCAAGAATGTCAGGCAAACAGACATCATAATATGTGGCATGAATTTGATCTTTGTGGGAACTGAGGTTGGTCCATGGAGCAAAACTGGAGGGTTAGGAGATGTTCTTGGAGGTCTGCCATCAGCTTTGGCAGCTAATGGACATCGCGTTATGACCATTGTTCCGCGTTACGATCAGTACAAAGATGCATGGGATACAAGTGTTGTAGCTGAGGTAAAAGTAGGAAATAGAACCGAAAAAGTTGGCTTCTTCCATTGCTATAAAAGAGGAGTTGATCGCGTCTTTGTTGATCATCCGGTATTTCTTGAAAAGGTCTGGGGGAAAAGTGGAACCAAACTTTACGGACCTGCGGCTGGAGATGATTACGAAGATAATCAACTACGATTCAGCCTCTTCTGTCAGGCAGCTCTGCTAGCACCGAGGGTTCTGAATCTTAAGGGCAGTAAATATTTCGCTGGACCATATGGCGAAGATGTTATTTTCATTGCAAATGATTGGCACACTGCTCTTCTCCCTTGCTACTTGAAAACTATATACCAACCATTGGGAATCTTTAAGAACGCTCAAGTTGTATTTTGTATCCACAACATTGCTTACCAAGGCAGATTTCCATTTGTTGACTTTTCACTTCTCAATCTACCTGACCAATTTAAAAGTTCCTTTGACTTCCTTGATGGGCATGTTAAACCAGTGATTGGAAGAAAAATCAATTGGATGAAAGCTGGAATTATAGAATCACACCTGGTGTTGACTGTAAGCCCATACTATGCTCAGGAACTAGTGTCAGGCCCAGATAAAGGGGTGGAGTTGGACAACATCATTCGCAAAAATGGCATTACTGGAATTGTGAATGGCATGGATGTTCAAGAGTGGAATCCTTCTACTGATAAATACATAACTGTCAAATACACTGCTGCAACTGTATTGGAAGGAAAGGCTCTTTTGAAAGAAGCCCTACAAGCAGAAGTTGGATTGCCGGTAGACAGAAATATTCCTCTTATATGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGAAGCCATTCCTCAATTTATTAAGGAGAATGTTCAGATAGTAGCCCTTGGAACAGGGAAAAAACAAATGGAAAAGCAGCTTCAGCAGCTTGAAGTATCATACCCTGACAAGGCCAGAGGAGTGGCAAAATTTAATGTTCCTCTAGCTCATATGATAATCGCCGGAGCTGATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTTATTCAACTACAAGCTATGCGCTATGGAACTGTACCTCTTGTTGCCTCAACTGGTGGACTAGTTGACACAGTCAAAGAAGGTTTCACAGGATTTCAGATGGGTGCCTTCAACGTTGAATGTGATGCTGTGGATCCTGCTGATGTGGATGCTCTGGCTAAGACTGTAAAAAGGGCTCTTGCAGTTCATGGAACTCCAGCTTTTAGAGAAATTATCAAGAATTGCATGGCTCAAGATCTTTCATGGAAGGGGCCTGCTAAGAAGTGGGAGGAAGTTCTACTAAGCTTGGGAGTTCCTGGCAGTGAACCTGGAATTGATGGCGAAGAAATTATACCACAGGTGAAGGAAAATGTGGCAACTCCATAA 1845 0.4136 MATVTASSNLVYRNSQLHYGPTISYEPKTAPMRLQYQNQINTHNGLRILNIVDVLQNRTPIKVNSAQATKKRLQSKNVRQTDIIICGMNLIFVGTEVGPWSKTGGLGDVLGGLPSALAANGHRVMTIVPRYDQYKDAWDTSVVAEVKVGNRTEKVGFFHCYKRGVDRVFVDHPVFLEKVWGKSGTKLYGPAAGDDYEDNQLRFSLFCQAALLAPRVLNLKGSKYFAGPYGEDVIFIANDWHTALLPCYLKTIYQPLGIFKNAQVVFCIHNIAYQGRFPFVDFSLLNLPDQFKSSFDFLDGHVKPVIGRKINWMKAGIIESHLVLTVSPYYAQELVSGPDKGVELDNIIRKNGITGIVNGMDVQEWNPSTDKYITVKYTAATVLEGKALLKEALQAEVGLPVDRNIPLICFIGRLEEQKGSDILVEAIPQFIKENVQIVALGTGKKQMEKQLQQLEVSYPDKARGVAKFNVPLAHMIIAGADFILIPSRFEPCGLIQLQAMRYGTVPLVASTGGLVDTVKEGFTGFQMGAFNVECDAVDPADVDALAKTVKRALAVHGTPAFREIIKNCMAQDLSWKGPAKKWEEVLLSLGVPGSEPGIDGEEIIPQVKENVATP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0546 614 Pfam Starch synthase catalytic domain 90 350 IPR013534 -
Lal22g0546 614 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 83 586 - -
Lal22g0546 614 Gene3D Glycogen Phosphorylase B; 90 580 - -
Lal22g0546 614 Hamap Glycogen synthase [glgA]. 88 589 IPR011835 GO:0004373
Lal22g0546 614 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 1 614 - -
Lal22g0546 614 CDD GT5_Glycogen_synthase_DULL1-like 89 588 - -
Lal22g0546 614 PANTHER GRANULE-BOUND STARCH SYNTHASE 1 614 - -
Lal22g0546 614 Gene3D Glycogen Phosphorylase B; 361 571 - -
Lal22g0546 614 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 88 587 IPR011835 GO:0004373
Lal22g0546 614 Pfam Glycosyl transferases group 1 405 527 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0546 Lal-Chr22 3690465 3694599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0546 1 614 Glycosyltransferase AT1G32900 68.994 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0546 K13679 - gmx:100817424 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0546 22 3690465 3694599 Lal22g0546 22 3690465 3694599 ECH
Lal22g0546 22 3690465 3694599 Lal18g1061 18 13668382 13672872 LSH