Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0517 ATGGCCAAACTGGGAAAGCTAACAAAGCTCAAGTCAGCTATCAAAAGGTGGCCATCATTGACCAAGCTCAGCCGCAACAACAGCTCCGTCTCCGCCACATGCACTGACTCCTCCGCCCACAACAACAAAGGTGGCACCGCCTCCAATGAAAAAGAACAACATGGACTCTACGCCGTCTATGTTGGCAAGTCTAGGCGGCGGTACCTAGTAAACTCCAACACCATTGACCACCCAGTGTTTCAGGAGCTAGTGGACAAGTCTTGTTCTTATTCTGATGGGGTTGTGGTTTCATGTGAGGTGGTTCTGTTTGAGCACTTTCTGTGGATGCTTGAGAGCAATGACACTCAGATGGGGTCCATGGATGAGATTGTTGAGTTCTACAATTGTGCATGCTGA 396 0.4924 MAKLGKLTKLKSAIKRWPSLTKLSRNNSSVSATCTDSSAHNNKGGTASNEKEQHGLYAVYVGKSRRRYLVNSNTIDHPVFQELVDKSCSYSDGVVVSCEVVLFEHFLWMLESNDTQMGSMDEIVEFYNCAC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0517 131 Pfam Auxin responsive protein 16 110 IPR003676 GO:0009733
Lal22g0517 131 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 129 IPR003676 GO:0009733
Lal22g0517 131 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR78 4 129 - -
Lal22g0517 131 MobiDBLite consensus disorder prediction 28 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0517 Lal-Chr22 3428246 3428641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0517 55 125 Calmodulin-binding Proteins AT3G43120 30.263 2.09e-07 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0572 6 3683370 3683780 Lal22g0517 22 3428246 3428641 LSH
Lal22g0517 22 3428246 3428641 Lal18g1091 18 13950222 13950638 LSH