Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0493 ATGGATGTGAAAATGAAAAGCAGGGGAATAGGATTGAGCTTTTTTGTGTTTAACTTTTTTGTATTTTCTTCTATTTTGCCACTCTCTTTCTCAGCTGCCAATCAGCCTCGTAGCTTCAAAAAACCTGATCATCAATTTGGCTCCTCAGCTGTTTTCCCAGTTCAAGGAAATGTATACCCTCTTGGGCATTACACAGTGTCCCTCAACATGGGCTATCCTCCTAAACTTTTTGACCTTGACATTGACTCAGGTAGTGACCTCACCTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTAATGATCAACTTTATAAACCCAAGAACAACCTTGTGCGATGTGTGGATCGGTTGTGTGCTGAAGTGCAATTAACAACAGACCAGCATTGTGCTACTCCAGATGATCAATGTGACTATGAGGTTGAGTATGCAGACAATGGATCATCTTTGGGTGTGCTAGTCCAAGACTATGTTCCTCTTCAATTCACCAATGGCTCTGTGGTACGGCCTAGGATAGCCTTCGGGTGTGGATATGATCAAAAGTTTTCTGGTTCTACCTCCCCGCCTTCTACAGCAGGGGTTCTTGGTCTTGGCAGTGGCAGTGCAAGCATTTTGTCCCAGCTTCATTCTCTCGGTCTGATACGCAATGTAGTTGGCCACTGCTTAAGTGGGCGAGGAGGAGGGTTTTTATTCTTCGGAGATGATCTCATTCCCTCATCTGGAATTGTTTGGACACCCATGTTACCTGACTCCTCTGAAAAACACTACAGTGCAGGACCAGCTGAATTGTTTTTCAATGGAAAAACTACTGCTGTTAAGGGTCTCGAACTTATCTTTGATAGTGGGAGTTCTTACACATACTTCAACTCCCAAGCTTATCAAGCCATTGTTGATCTGGTATCTAATGCTTTGAAGGGAAAACAGTTGAAAAGAGCAACCGAGGATCCATCACTTCCAGTTTGTTGGAAGGGTGCAAAGTCTTTCAAATCATTGAGTGATGTCACAAACTATTTTAAGCCCCTAGCTTTGAGCTTCACAAAAATGAAGAATGTGAAGATGCAAATACCACCAGAAGCTTATCTAATTGTCACGAAATATGGCAATGTCTGCTTGGGGATTCTAGATGGCACTGAAGTAGGACTAGAAAATCTTAACATAATAGGAGATATCTCTTTACAAGACAAAATGGTGATTTACGACAATGAGAAACAGCAGATTGGATGGGTTTCTACCAATTGTGATAGGCTTCCCAAGTCATAA 1266 0.425 MDVKMKSRGIGLSFFVFNFFVFSSILPLSFSAANQPRSFKKPDHQFGSSAVFPVQGNVYPLGHYTVSLNMGYPPKLFDLDIDSGSDLTWVQCDAPCKGCTKPNDQLYKPKNNLVRCVDRLCAEVQLTTDQHCATPDDQCDYEVEYADNGSSLGVLVQDYVPLQFTNGSVVRPRIAFGCGYDQKFSGSTSPPSTAGVLGLGSGSASILSQLHSLGLIRNVVGHCLSGRGGGFLFFGDDLIPSSGIVWTPMLPDSSEKHYSAGPAELFFNGKTTAVKGLELIFDSGSSYTYFNSQAYQAIVDLVSNALKGKQLKRATEDPSLPVCWKGAKSFKSLSDVTNYFKPLALSFTKMKNVKMQIPPEAYLIVTKYGNVCLGILDGTEVGLENLNIIGDISLQDKMVIYDNEKQQIGWVSTNCDRLPKS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0493 421 Pfam Xylanase inhibitor N-terminal 64 236 IPR032861 -
Lal22g0493 421 Gene3D Acid Proteases 237 418 IPR021109 -
Lal22g0493 421 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 418 - -
Lal22g0493 421 PRINTS Pepsin (A1) aspartic protease family signature 70 90 IPR001461 GO:0004190|GO:0006508
Lal22g0493 421 PRINTS Pepsin (A1) aspartic protease family signature 279 290 IPR001461 GO:0004190|GO:0006508
Lal22g0493 421 PRINTS Pepsin (A1) aspartic protease family signature 387 402 IPR001461 GO:0004190|GO:0006508
Lal22g0493 421 ProSiteProfiles Peptidase family A1 domain profile. 64 411 IPR033121 -
Lal22g0493 421 Gene3D Acid Proteases 40 236 IPR021109 -
Lal22g0493 421 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 279 290 IPR001969 GO:0004190|GO:0006508
Lal22g0493 421 PANTHER ASPARTYL PROTEASES 4 418 IPR001461 GO:0004190|GO:0006508
Lal22g0493 421 SUPERFAMILY Acid proteases 56 418 IPR021109 -
Lal22g0493 421 Pfam Xylanase inhibitor C-terminal 278 410 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0493 Lal-Chr22 3253396 3262242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0493 25 421 Miscellaneous Gene Families AT1G44130 58.040 8.32e-174 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0493 - - aprc:113846122 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0493 22 3253396 3262242 Lal22g0493 22 3253396 3262242 ECH