Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0470 ACAGGGCAAAGAACATGTGAGTGTGCTAGAGTTTTCACCATAGTGAATTACTGCAAGGAAACACTATGGCCAGCAGCGATACCGGGAGACAACTTCAATGGTGGAGGTTTTGTTCTAAAACCAGGCCAATCCTCTGTGTTCTCAGCTCCAATTGGGTGGAGTGGTCGAATTTGGGCTCGAACCGGCTGCAATTTCGACAAAAATGGCATCGGAAATTGCCAAACCGGTTCATGTGGCACAAGTCTCAAATGTGGAAGCTCAGGAAAAACTCCAGCCTCACTAGCAGAATTTACACTAGCACAGTTAGACTTCTATGATGTTAGCCTTGTTGATGGCTTCAATGTGCCAATATCTATAAAACCCTTAAATGGAAAGGGAAACTGCACCAATGCTGGCTGTGACTCTGACCTTAGAACCACTTGTCCCAAAGAACTTTCAGTCAAAACTAATGGCAAGACCATTGGCTGCAGAAGTGCTTGTGATGTGTTTAACACTGATGAGTATTGCTGCAGAGGAAACTTTGGGAACCCTTCTACTTGTAGACCTACCTTCTATTCCAAGAAATTTAAGGAAGCATGCCCAACTTCATATAGTTATGCATATGATGATCCAACTAGTATTTGCACTTGTCAAGGAACAGATTATGTTATAGCTTTCTGTGCTTCCAGGAATAAACAGGTATGTGCTTATCATAATCACAAGCTTCAATGCAGTGGATCACAAGGCTTAAAGTCATTGTTTGGAAGAAGGTGGATTGTGATGCTAATGGGATTTTCAATTCTTAGTTTGGGGATTGCATTCTAG 804 0.4229 TGQRTCECARVFTIVNYCKETLWPAAIPGDNFNGGGFVLKPGQSSVFSAPIGWSGRIWARTGCNFDKNGIGNCQTGSCGTSLKCGSSGKTPASLAEFTLAQLDFYDVSLVDGFNVPISIKPLNGKGNCTNAGCDSDLRTTCPKELSVKTNGKTIGCRSACDVFNTDEYCCRGNFGNPSTCRPTFYSKKFKEACPTSYSYAYDDPTSICTCQGTDYVIAFCASRNKQVCAYHNHKLQCSGSQGLKSLFGRRWIVMLMGFSILSLGIAF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0470 267 PANTHER OS03G0233200 PROTEIN 3 234 IPR001938 -
Lal22g0470 267 Gene3D Thaumatin 11 220 IPR037176 -
Lal22g0470 267 SUPERFAMILY Osmotin, thaumatin-like protein 11 221 IPR037176 -
Lal22g0470 267 ProSiteProfiles Thaumatin family profile. 9 220 IPR001938 -
Lal22g0470 267 Pfam Thaumatin family 16 220 IPR001938 -
Lal22g0470 267 CDD TLP-PA 11 220 - -
Lal22g0470 267 PIRSF PR5 1 260 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 11 23 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 35 44 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 56 67 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 69 98 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 103 119 IPR001938 -
Lal22g0470 267 PRINTS Pathogenesis-related protein signature 211 220 IPR001938 -
Lal22g0470 267 SMART tha2 12 221 IPR001938 -
Lal22g0470 267 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 3 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0470 Lal-Chr22 3120685 3121603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0470 9 220 Receptor kinase-like Gene Family AT5G38280 41.593 2.96e-49 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0470 - - gmx:100782658 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0470 22 3120685 3121603 Lal22g0470 22 3120685 3121603 ECH
Lal22g0470 22 3120685 3121603 Lal6g0509 6 3260522 3262281 LSH