Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0080 ATGGGTCAGATCGGAAGGAGGAAGAAGAAAGGACGCCCCTCAAAGGCAGATCTAGCTCGTCGGAGTGGGGAATCTCCGGCATCCGCGCAGTCAGACCTGCGACGTAGCCGACGGCGGAGGAATGTGAGGTACACCAACATGATTGACTACGACGATTACCTCGACGAGGAAGAAGAAGACGAAGACGAGAGAAGACGCGAGAAGAAGAAGCTCAAGCTCGTTATGAAGCTCAACCAGGGCGCAGAAGAAGATGACGAGGAACAAGAAGGAGAAGATAACGAGCACCACGACTATAACAAAAACAGCGCGTCGAATCGCACGCGCGTGGTTCCGCGTGAGGCACACGCGCCAGAGGTGGAGAAGATAGCGAAGAAGAGAGGTGAGGAAATGGAAGAGGAGGAGGAAGATGAATTAGAAGAAGAAGAAGGAAATGAAATAGAAGCAGAGGAAAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAACGTGAGGTAAAGGGAACAAAAGTTGATTCTAAATGGCCCCACTCTGTTTCAGGAACTCCATCAAAGCTGCTTCCATCTGGGTCCGGAATTCCCTTGCCTGATAAGAGGACCCTCGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACATATGGTGTGTATGCTGAGCCTGTCGATCCAGAAGAGCTTCCCGATTACCATGATGTAATCGACCATCCCATGGACTTCGCCACTGTCAGGAAGAAGTTGGCAAATGGATCTTATCCTACCTTTGAACAATTTGAGAGTGATATATTTTTGATTTGCTCAAATGCAATGCAATACAATGCACCGGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGCACAGAAAAAGTTTGAGAAGTTGAGGATTGACTTCGGACGCTCTCATAATGAGCTGAAATCTTCCGATCAAAAGACTAGATCTAATTCTTTGGTTAAGAAGCTTGCAAAGAAGCCACTGGGTGCTTCACAGGAACCTATTGGCTCTGATTTCTCCTCAGGTGCAACTCTTGCTACCCTTGGAGATGTACAACCAACTTCCCATCCAATGCAAGGTGTCATCTATGAAAGGCCTGGCAATGTTGACGCCCTCGTGGAGGGGAATGCTTTCTTCATTGACACAAATCAAGAGAAAGCAGAAGACATCTTATCAGGGAAGGGTATACTCTCCAAGTTGGGAAGGAAGTCGTCTGTGCAAGATTATGAACGTCGTGCAACTTATAATATTTCTAATCAACCAATTAGTAGACCAGATTCGATATTTACAACCTTTGAGAGTGAAGTCAAGCAGCTAGTTACTGTCGGACTTCAAGCTGAATATTCCTATGCTAGGAGTTTGGCTCGTTTTGCTGCAACACTGGGACCTACTGCGTGGGAAATTGCTTCCCAAAAGATTCAGCAGGCACTCCCACCTGGCTGTAAGTTTGGTCGTGGTTGGGTTGGAGAATATGAACCGCTCCCAACCCCAGTATTAAGGTTTGATAATTGTGTCCAGAAAGAACCTAGTTTGGTAAAGAAGTTGCAGTGTACGACGGGATCAATAAAGGTTGACAAAAACTGTAAGAATGTGGAACCCACCATGCAACAACCTGTTAATGGACCAATGATTGAGGAAAAACAGCCTTCAGTTCATCCCGGTAGCGGGCCTACATTAGAAGGAAAGCCATCTTTGTTTGGTTCTGTGGGTGTAAGATCCAACACTCCTGCCAATCTCCCTCATCAGCAACCCAATGTCCAAACCAGGAACCTTGGCAAGTCCAAGAATAAGGGTTTGAAACAAGTGGAACTGAACTCTTTACCACCGACTGATCAGAATAATGTCAGTCTAGTTGCAAAGCTTACCAGTAATGCTCCTGCCTCTGTATCAAGGCCCAGAGAGATGGTACCATGTAACAGAAATATTTCACCATCTATGCCTTTCAAGCAGCCAGATACTAATGGTGTTGTTGGTGGTGACTTGCCTAATGGAAAAGTCAGGAATACTACTATGAATAGACGAATGCCTGGTCCATCTGAGAGTACATCAAATCAAACAGGCAGAGCAGCTCCCTTTATTGCCCATGGACAACCATCACCTGAGAGCACATTGAATCAAGCAGGAAGAGCAGCTCCATTTTTTGCCCATGGACAAACATCACGCGAGAGCACATCGAATCAGATAGGAAGAGCAACTCCCTTTGTTTCCCATGGGCAACCATCGCCAAAGAGCACATCGAATCAGACAGGAAGAGCAACTCCTTTTTTTGCCCATGGGCAACCATCACCTGAGAGCACATCGAATCAGACAGGAAGAGCAACTCCCTTTTTTGCCCATGGGCAACCATCACCTGAGAGAACATCAAATCAGACAGGAAGAGCAACTCCTATTTTTGCCCATGGGCAACCATCACCTGAGAGCACATCGAATCAGACAGGAAGAGCAGTTCCCTTTCTTCCCCATGGACAACCATCACCTGAGAACACATTTAATCAAACAGGAAGAGCAGCTCCATCTGTTGCCCATGGACAAGAGCAAAGTCTTAGTGACCCAGTTCAGCTGATGAGGATGTTAGCCGAAAAGGCTCAAAAACAACAACAGACTTCCAGTTCTTCTGACCATTCCCCTGTTGATACTCCATCAGGGGTATCATCTGTTCCATCTGGACAGAGAGATGGCACGGGCAACGCTTCAGCAGCAGCTGCCCGTGCATGGATGTCTGTAGGAGCAGGAGGGTTTAAACAAGGACCTGAGAGTCCTAGTCCTAATTCACCTAAAAACCAGATTTCTGCAGATTCATTGTATAATCCAGTGCGAGAGTTCCATCAGCATATGTCACGAATTCGGGGGGAGTTTCCGTCTAGTGGAATGTCTTTCCAGTCTGATAAGAACAATTTTCCATTTCAGGCACTTGCACATCAACCTATGCACCCAGTTGGTGTTTCTCAGTTTCAAAACCGACCGACGGTTTTCCCTCAAGTAGCAGCACCCTCTGACCTGTCAAGATTTCAAATGCAGCCACCTTGGCAAGGTATCCGGCCTCCTAGTCAACCGAGGCAGAAAAAGGAAACACTTCCTCCTGACTTGAATATTGGTTTCCAATCTCCCGGGTCACCTGTGAAACAATCTTCTGGTGTGATGGTTGACTCACAGCAACCAGACCTAGCTTTGCAACTGTGA 3186 0.4655 MGQIGRRKKKGRPSKADLARRSGESPASAQSDLRRSRRRRNVRYTNMIDYDDYLDEEEEDEDERRREKKKLKLVMKLNQGAEEDDEEQEGEDNEHHDYNKNSASNRTRVVPREAHAPEVEKIAKKRGEEMEEEEEDELEEEEGNEIEAEENEEEEEEEEEEEEEEREVKGTKVDSKWPHSVSGTPSKLLPSGSGIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRKKLANGSYPTFEQFESDIFLICSNAMQYNAPETIYHKQARSIQELAQKKFEKLRIDFGRSHNELKSSDQKTRSNSLVKKLAKKPLGASQEPIGSDFSSGATLATLGDVQPTSHPMQGVIYERPGNVDALVEGNAFFIDTNQEKAEDILSGKGILSKLGRKSSVQDYERRATYNISNQPISRPDSIFTTFESEVKQLVTVGLQAEYSYARSLARFAATLGPTAWEIASQKIQQALPPGCKFGRGWVGEYEPLPTPVLRFDNCVQKEPSLVKKLQCTTGSIKVDKNCKNVEPTMQQPVNGPMIEEKQPSVHPGSGPTLEGKPSLFGSVGVRSNTPANLPHQQPNVQTRNLGKSKNKGLKQVELNSLPPTDQNNVSLVAKLTSNAPASVSRPREMVPCNRNISPSMPFKQPDTNGVVGGDLPNGKVRNTTMNRRMPGPSESTSNQTGRAAPFIAHGQPSPESTLNQAGRAAPFFAHGQTSRESTSNQIGRATPFVSHGQPSPKSTSNQTGRATPFFAHGQPSPESTSNQTGRATPFFAHGQPSPERTSNQTGRATPIFAHGQPSPESTSNQTGRAVPFLPHGQPSPENTFNQTGRAAPSVAHGQEQSLSDPVQLMRMLAEKAQKQQQTSSSSDHSPVDTPSGVSSVPSGQRDGTGNASAAAARAWMSVGAGGFKQGPESPSPNSPKNQISADSLYNPVREFHQHMSRIRGEFPSSGMSFQSDKNNFPFQALAHQPMHPVGVSQFQNRPTVFPQVAAPSDLSRFQMQPPWQGIRPPSQPRQKKETLPPDLNIGFQSPGSPVKQSSGVMVDSQQPDLALQL 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0080 1061 Pfam Bromodomain 205 285 IPR001487 GO:0005515
Lal22g0080 1061 MobiDBLite consensus disorder prediction 862 897 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 130 165 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 667 692 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 826 849 - -
Lal22g0080 1061 Coils Coil 124 174 - -
Lal22g0080 1061 ProSitePatterns Bromodomain signature. 217 273 IPR018359 -
Lal22g0080 1061 SMART bromo_6 192 300 IPR001487 GO:0005515
Lal22g0080 1061 MobiDBLite consensus disorder prediction 1006 1061 - -
Lal22g0080 1061 Gene3D - 121 320 IPR036427 GO:0005515
Lal22g0080 1061 SUPERFAMILY Bromodomain 186 298 IPR036427 GO:0005515
Lal22g0080 1061 MobiDBLite consensus disorder prediction 719 849 - -
Lal22g0080 1061 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 769 - -
Lal22g0080 1061 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 822 1061 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 1 15 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 111 129 - -
Lal22g0080 1061 ProSiteProfiles Bromodomain profile. 211 281 IPR001487 GO:0005515
Lal22g0080 1061 MobiDBLite consensus disorder prediction 1 198 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 719 818 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 919 933 - -
Lal22g0080 1061 Coils Coil 50 74 - -
Lal22g0080 1061 CDD Bromodomain 199 295 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 646 707 - -
Lal22g0080 1061 PRINTS Bromodomain signature 228 244 IPR001487 GO:0005515
Lal22g0080 1061 PRINTS Bromodomain signature 244 262 IPR001487 GO:0005515
Lal22g0080 1061 PRINTS Bromodomain signature 262 281 IPR001487 GO:0005515
Lal22g0080 1061 PANTHER BROMODOMAIN CONTAINING PROTEIN 822 1061 - -
Lal22g0080 1061 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 769 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 862 933 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 62 81 - -
Lal22g0080 1061 MobiDBLite consensus disorder prediction 1037 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0080 Lal-Chr22 502672 509534 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0080 K22184 - gmx:100799455 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0080 22 502672 509534 Lal22g0080 22 502672 509534 ECH