Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1380 ATGATTATGATGTATGCATCCACTTCATTAGTAGTCTCTTCAATCCTTATTCCCTCATCATCCTCATATCTTATCCCATTCACTAAAACCACTTTTACTTGTAATGTTTCAAAATCTGTTTGGACAAGAACATCACCATCACTATCATCATCATCATACAATAAACAACGTAGTAGAACACAACAACCTTCACACTTGGATCATGAGGTTGACATGGATGACCTTTTATCTTCAATAAATGAAACCCAAAATGAACATGACCTCTACGCTCTTCTCTCTCGTTACAGTGGAAGACAACTCTCTATTCGATTCATGGTTTCACTTCTCTCTCGCCAATCTGATTGGCAACGCTCCCTCGCTATTCTTGATTGGATCAATCACAAGGCTCGTTATTCTCCTTCTCTCTTCGCTTTCAACGTTGTTATCAGGAATGTTCTCAGAGCCAAGCAATGGCAACTCGCACACGGCCTGTTTGATGAAATGCGCCAATTGGGTCTTTCCCCTGATAGGTACACTTATTCCACCCTCATCACTTATTTTGGCAAACACGGCTTGTTTGATTCTTCTCTGTTTTGGCTTCAGCAGATGGAGCAAGACAATGTACCCGGTGACCTTGTTTTGTATTCTAATTTGATTGAGCTTTCACGAAAGTTGTGTGACTATTCTAAGGCCATTTCCATCTTCATGAGATTGAAAACCTCTGGTATTACTCCTGACCTTGTAGCATATAACTCCATGATTAATGTATTTGGGAAAGCTAAGCTCTTCCGCGAGGCACGTCTTCTACTTCACGAGATGAGGGAAAATGGTGTTCAACCGGACACCGTCAGCTACTCCACGCTTCTCACCATGTACGTTGAGAATCATAAGTTTGTGGAAGCGCTTTCTGTGTTCTCTGAAATGAATGAAGGGAAGTGCACACCTGATCTTACCACTTGTAATATCATGATTGATGTTTACGGCCAGCTTGACATGGCCAAGGAAGCTGACCGGCTATTCTGGAGCATGAGGAAAATCGGGATTGAACCGAGCGTGGTTAGTTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGAGAAGCCATCCAACTGTTTCGTTTGATGCAAAAAAAGTGTATACAACAGAATGTGGTTACTTACAACACTATGATTAAGATTTATGGCAAGTCTCTTGAGCATGAAAAGGCAACAAATCTTATTCAAGAAATGCAGAATAGAGGTATTGAACCAAATTCCATCACGTATTCGACAATAATATCAATATGGGAGAAGGCAGGGAAACTAGACAGGGCAGCCATGTTGTTTCAAAAGTTAAGGAGTTCAGGAGCTGAAATCGATCAGGTTCTTTACCAGACGATGATTGTAGCATATGAAAGGGCAGGCTTAGTCGGTCATGCTAAGCGTCTACTTCAAGAGCTAAAGCAACCGGATAGCATTCCTAGGGAGACTGCCATCACGATTCTTGCTAGAGCCGGCAGAATTGAAGAGGCTACATGGGTTTTCCGACAGGCTTTTGATGCCGGAGAGATTAAAGATATATCTGTGTTTAGCTGCATGATTGATCTTTTCTCGAGGAACAAAAAGTATGCAAATGTTCTGGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTAATGTTATTGCTCTCGTGCTGAATGCTTTCGGAAAGCTGCGGGAATTTGAGAAAGCAGATGCTTTATACGGACAGATGTATGAAGAAGGGTGTATTTTTCCAGATGAAGTTCATTTCCAGATGCTAAGTCTTTATGGTGCAAAAAGGGATTTCAAGATGGTAGAGTCATTGTTTGAGAAGTTAGATTCCAATCCCAATATCAACAAGAAGGAGTTGCATCTTAGAGAGAGAGAGAGAGAGAGTATGATGGTTGTGAAGAAGGAGAAGAAGAAGCATGTCCCGGAGTGGCTCAATAGTCCTCTCTGGTCATCACCCTCTTCCGATTACCACTTCACTCTCGCCGAACCTCCTCCTTCTCCTCCTCCTCCTCCATCACCACCACCATCACCACCACTTGTTCCTGTCATAGAACAACAACAACAACAACAACAACAACAAGAAGATCCAATTCAATATTCAGTACCCACTTCTTCATCCTCTTCCTCCATCCATGACATCTCCACTCAACCTCAATTACTCACTGAGTTATCTAGGAAGGTGATAGATATGCGAGAGTTATGGAGAATCGCTTCTCAAGGTATACCCGATTCTTCTACTTTACGATCTACTCTCTGGAAGCTTTTCCTTCAATATCTTCCACCCGATCGCGCCCTTTGGTCGTCTCAATTAGCAAAGAAAAGATCTCAGTACAAACATTTTAAAGACGACCTTCTCATGAACCCTTCAGAAATCACAAGGAGGATGTACAACTCCACAAGTTATGACACCGATGATGCGCAATGTCCGAACAGGTTCTTACTTTCTAGATCACCAATCACTCACAGGGACCACCCTTTGAGTCTTGACCAAACCAGCATATGGAATAAGTTCTTCCAGGACTCGGAGATCATAGATCAAATTGACAGAGATGTAAAGCGCACTCATCCAGATATGCACTTTTTCTCTAGCAATTCTCAAATTGCAAAATCTAATCAGGAGGCTCTAAGGAACATATTAATTATTTTTGCAAAGTTGAACCCAAGTATACGATATGTTCAAGGGATGAATGAGATATTGGCTCCTATATTCTATGTGTTCAAAAATGACCCCGATGAGGAAAGTGCGGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTAGATGGGTTCCGAGATAATTTTGTCCAACAACTTGATAATAGTGTTGTTGGAATTCGTTCCAAAATTGCAAGATTGTCTCAGCTTTTGAAGGAGCACGATGAAGAACTGTGGCGTCATCTTGAGGTCACGACTAAAGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCGGGAATTCAATTTTGCTGACATCCTTCATATTTGGGACACCCTTTTAAGTGATCCAGAGTCTCGACAGGAGACACTTCTGCGGATATGCTGTGCGATGCTAATTCTGGTTCGTCGGCGCCTTCTAGCTGGTGATTTCACTTCTAATCTGAAGTTGCTGCAAAGCTATCCCTCTACAAACATTAGTCATTTGCTCTACGTTGCTAATAAGTTACGTGTACAGTCAGTCTAA 3216 0.4185 MIMMYASTSLVVSSILIPSSSSYLIPFTKTTFTCNVSKSVWTRTSPSLSSSSYNKQRSRTQQPSHLDHEVDMDDLLSSINETQNEHDLYALLSRYSGRQLSIRFMVSLLSRQSDWQRSLAILDWINHKARYSPSLFAFNVVIRNVLRAKQWQLAHGLFDEMRQLGLSPDRYTYSTLITYFGKHGLFDSSLFWLQQMEQDNVPGDLVLYSNLIELSRKLCDYSKAISIFMRLKTSGITPDLVAYNSMINVFGKAKLFREARLLLHEMRENGVQPDTVSYSTLLTMYVENHKFVEALSVFSEMNEGKCTPDLTTCNIMIDVYGQLDMAKEADRLFWSMRKIGIEPSVVSYNTLLRVYGEAELFGEAIQLFRLMQKKCIQQNVVTYNTMIKIYGKSLEHEKATNLIQEMQNRGIEPNSITYSTIISIWEKAGKLDRAAMLFQKLRSSGAEIDQVLYQTMIVAYERAGLVGHAKRLLQELKQPDSIPRETAITILARAGRIEEATWVFRQAFDAGEIKDISVFSCMIDLFSRNKKYANVLEVFEKMREVGYFPDSNVIALVLNAFGKLREFEKADALYGQMYEEGCIFPDEVHFQMLSLYGAKRDFKMVESLFEKLDSNPNINKKELHLRERERESMMVVKKEKKKHVPEWLNSPLWSSPSSDYHFTLAEPPPSPPPPPSPPPSPPLVPVIEQQQQQQQQQEDPIQYSVPTSSSSSSIHDISTQPQLLTELSRKVIDMRELWRIASQGIPDSSTLRSTLWKLFLQYLPPDRALWSSQLAKKRSQYKHFKDDLLMNPSEITRRMYNSTSYDTDDAQCPNRFLLSRSPITHRDHPLSLDQTSIWNKFFQDSEIIDQIDRDVKRTHPDMHFFSSNSQIAKSNQEALRNILIIFAKLNPSIRYVQGMNEILAPIFYVFKNDPDEESAAFAEADTFFCFVELLDGFRDNFVQQLDNSVVGIRSKIARLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTREFNFADILHIWDTLLSDPESRQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLYVANKLRVQSV 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1380 1071 MobiDBLite consensus disorder prediction 659 719 - -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Lal21g1380 1071 ProSiteProfiles TBC/rab GAP domain profile. 746 1014 IPR000195 -
Lal21g1380 1071 Pfam Rab-GTPase-TBC domain 843 1035 IPR000195 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Lal21g1380 1071 Gene3D Tetratricopeptide repeat domain 364 467 IPR011990 GO:0005515
Lal21g1380 1071 Gene3D Tetratricopeptide repeat domain 73 217 IPR011990 GO:0005515
Lal21g1380 1071 SUPERFAMILY TPR-like 416 556 IPR011990 GO:0005515
Lal21g1380 1071 MobiDBLite consensus disorder prediction 686 719 - -
Lal21g1380 1071 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 726 973 IPR035969 -
Lal21g1380 1071 Gene3D - 950 1070 - -
Lal21g1380 1071 MobiDBLite consensus disorder prediction 43 60 - -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Lal21g1380 1071 MobiDBLite consensus disorder prediction 43 65 - -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lal21g1380 1071 SMART tbc_4 741 1040 IPR000195 -
Lal21g1380 1071 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 34 625 - -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 346 377 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 137 169 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 518 550 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 557 586 IPR002885 -
Lal21g1380 1071 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Lal21g1380 1071 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 951 1068 IPR035969 -
Lal21g1380 1071 Gene3D Tetratricopeptide repeat domain 218 363 IPR011990 GO:0005515
Lal21g1380 1071 Gene3D Tetratricopeptide repeat domain 478 668 IPR011990 GO:0005515
Lal21g1380 1071 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 831 941 - -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat 518 546 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat 451 477 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat 557 582 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat 346 375 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat 312 341 IPR002885 -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lal21g1380 1071 MobiDBLite consensus disorder prediction 665 685 - -
Lal21g1380 1071 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat family 238 285 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat family 133 178 IPR002885 -
Lal21g1380 1071 Pfam PPR repeat family 379 422 IPR002885 -
Lal21g1380 1071 PANTHER OS03G0856100 PROTEIN 34 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1380 Lal-Chr21 17153629 17164856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1380 211 614 Glycosyltransferase AT1G05670 23.716 1.87e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1380 - - jre:109008930 969.918