Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1367 ATGAAATGCTTATTTGCTATCCGTTTATTATTTGTAGTTTCTTCAGCTTGCTTGTGTGCTATAATAACACCTTCTTTAGCTTTTAGTGTCAATGTTTTTGACTATGGTGCCAAGGGGGATGGCCAAACAGATGATTCACAAGCTTTTCTGCAAGCATGGGAAGAGGTGTGTAATTGTGGTCAAGTGACCCCAACACTTGTTATACCATATGGGACAACTTTCATGTTGCAGCCTTTGAAGTTTCTGGGTCCTTGCAAGGCTGCAACCATTATAGTTAAGGTTGAGGGAACTATGATGGCCCCAAGCAACATGGAAGGTTGGAAATGGCCAAATGATGATGAGAAGAAGGAAATATGGGTTCAGTTCTCAGAGATAAGTGGTCTTGTCATTGAAGGAGGAGGTCAAATTGATGCACAAGGTACTCCATGGTGGAAGTATAAAGGTGACAAAGCCAGTTATAGACCAACTGCTCTACATTTTCATCGTTGTGAAAATCTAACTGTTACGGATTTGACACATATCAATAGCCCGAAAAATCATATAAGCATAAATAAGTGCAATGGCGCATACGTATCCAATCTTCATATTATTGCACCTGAGGATAGCCCAAACACTGATGGAATAGATATCTCAGAATCTACAAACATATTCGTTCTGAATTCTACAATTGAAACAGGTGATGACTGCATTGCCATAAATAGTGGTACCTTTTTCATCAACATAAGTAATGTTTATTGTGGACCTGGCCATGGCATTAGTGTTGGGAGTCTGGGAAAAAATGGAGCTTATGTTGAAGTAGAAGAGATACATGTAAAAAATTGTACCTTCAATGGCACAACAAATGGAGCAAGAATCAAGACATGGATTGGAGGAAGTGGGTTTGCTAGGAAGATCACATTTGAAGATATTATCCTTATTAATACTAAGAACCCTGTGATCATTAACCAACAATATGAAGACCATCATTCCATAAATGAAAATGGTAATGGAGAAGCAGTAGCAGTGAGTGATGTTATTTACAGAAATATAACTGGTACCTCAGCATGTGAGAATGCAATCAACCTGAGCTGTGACCTTAACATAGGGTGCAATGGTATTGTATTGGAGAATATTGAGATAACACCTTATTCTTCAGGAGATGAGGTATATGCATCTTGCACAAAAGCAAATGGAACAAGCTCTTCATGTTCTCCAATTCTCTCATGTCTTTCTAATTCTTCAAAGTTACCTTAA 1233 0.3828 MKCLFAIRLLFVVSSACLCAIITPSLAFSVNVFDYGAKGDGQTDDSQAFLQAWEEVCNCGQVTPTLVIPYGTTFMLQPLKFLGPCKAATIIVKVEGTMMAPSNMEGWKWPNDDEKKEIWVQFSEISGLVIEGGGQIDAQGTPWWKYKGDKASYRPTALHFHRCENLTVTDLTHINSPKNHISINKCNGAYVSNLHIIAPEDSPNTDGIDISESTNIFVLNSTIETGDDCIAINSGTFFINISNVYCGPGHGISVGSLGKNGAYVEVEEIHVKNCTFNGTTNGARIKTWIGGSGFARKITFEDIILINTKNPVIINQQYEDHHSINENGNGEAVAVSDVIYRNITGTSACENAINLSCDLNIGCNGIVLENIEITPYSSGDEVYASCTKANGTSSSCSPILSCLSNSSKLP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1367 410 PANTHER - 27 403 - -
Lal21g1367 410 ProSitePatterns Polygalacturonase active site. 243 256 IPR000743 GO:0004650|GO:0005975
Lal21g1367 410 SUPERFAMILY Pectin lyase-like 18 403 IPR011050 -
Lal21g1367 410 Gene3D - 20 408 IPR012334 -
Lal21g1367 410 Pfam Glycosyl hydrolases family 28 59 392 IPR000743 GO:0004650|GO:0005975
Lal21g1367 410 PANTHER - 27 403 - -
Lal21g1367 410 SMART pbh1 213 234 IPR006626 -
Lal21g1367 410 SMART pbh1 266 287 IPR006626 -
Lal21g1367 410 SMART pbh1 186 212 IPR006626 -
Lal21g1367 410 SMART pbh1 295 316 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1367 Lal-Chr21 17052096 17054314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1367 31 407 Glycoside Hydrolase AT5G27530 47.745 2.41e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1367 K01184 - qsu:111990272 414.846