Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1360 ATGCCTCCTCCAAAAGTTCTGATGGTGGCAGAGAAACCTAGCATTGCTCTCGCTATTGCTTCTGTTCTCTCTCACGGCCAGATGTTTACAAGAAGGGGAAGTACAGAAGTCCATGAATTCGAGGGAATGTTTCGTGATTCGCCAGCACATTTTAAAGTGACCTCGGTTATTGGCCATGTTTTCAGTCTAGATTTTCCTGCTAAATATCAAGATTGGTCGGCTACAGATCCATTCGATCTTTTTCAAGCTCAGGTTGTTAAGAATGAATCAAACCCAAAGGCACATATTTGTAGACATTTAAATCAAGAAGCTCGTGGATGTCGTTATTTGGTATTGTGGTTAGATTGTGACCGTGAAGGAGAAAATATATGTTTTGAGGTTTTAGAATCAAGTGGTTTCAATATACGTGATGCTTATCGTGCACGGTTTTCTTCAGTCACTGAGAAAGATGTTCTGAAGGCTCTAGACAACCTTGTCAAACCAAACAGAGCTGAGTCACTGGCTGTTGATGCTAGGCAAGAAATAGATTTAAAAGTGGGAGTTGCCTTCACTCGATTTCAGACGAGTTTTTTCCAGGGAAAATACGGGAACCTAGATTCCAGAGTCATCTCATACGGACCATGTCAAACTCCTACCCTTGGCTTTTGCGTGCAGCGTTATTTACAAATGAATACTTTCAAGCCAGAAAAATTTTGGAGTTTGCACCCTTACATATTTCATAATGGCTATGAAATTCAGCTAGAATGGCAACGTGGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAGCTTGTTGCTCAAGATGGAGTTTTGAAAGTTACTGAAATGTCAGAAAAACAGGAAACCAAAGCTCGTCCTGTTGGTTTGAACACAGTGAATCTTTTGAAGGTTGCTTCAAGTGCTCTAGGATTTGGACCTCAGATGGCTATGCAATTAGCCGAGAGATTGTATACTCAAGGCTACATCAGCTATCCTCGCACAGAAAGCACAGCATACCCTCCTTCATTTGACTTTCGTGGTGCACTCTCTGCACAAGCAAATAATCCAACATGGGGTAATTATGTACAAGGGCTACTTACCAATGGCTATCACAAACCTCGATCGGGAACAGATGTAGGCGACCATCCTCCCATTACTCCAATGAGATCAGCAGCAGAGGATACACTAGGCAATGATGCTTGGAAGCTGTACCAATATATATGTCAACACTTCATAGGGACAGTGTGTCCAGATTGCAAGTATTTAAGGAGAAAGGTTGAGTTTTCAATTGGTGGAGAGTCTTTTCATTGTACAGGGCATAATGTTATCACCAAAGGGTTTACAGCTATTATGCCATGGTTGGCCGTAAGTGATAAAAATCTTCCATCATTTATAAAAGGGCAGAAAATAGAGGTGTCAAAAATGGAGCTATATGAGGGGAGTACCGCGCCTCCAGATTATCTCACAGAAAGTGACCTGATCTCCCTGATGGAGAATAATGGAATAGGAACAGATGCATCGATTCCTGTGCATATTAACAATATATGTGAGCGGAATTATGTGCAGGTACAAGCAGGTAGGAAGCTTGTCCCAACTACATTAGGTATCACTTTAGTGAGAGGTTATCAAACTATTGATCCAGATCTATGCCTGCCCGATATTCGTAGCTTCATCGAGCAACAAATTACTCTTATTGCTAAGGGTCAGATAGATCATCATTATGTAGTGCAGCATGTAATCCAACAATTCATGCAGAAGTTCAGTTACTTTGTCAAGAAGATAGAAGACATGGATGCATTATTTGAAGCACAGTTTTCTACACTGACTGAATCAGGACGCATCTTGAGTAAATGTGGTAAATGCCTGCGATATATGAAATACATTTCTGCTCAGCCACCACGTTTGTATTGCGGTACATGTGAGGAGGTTTATGATCTTCCACAGAAGGGCATAATCAAGCTGTACAAGGAACTGTGCTGTCCTCTAGACAATTTTGAGCTTTTGCTCTGCTCCATGCCTGGACCAGAGGGTAAATCATACCCACTCTGCCCATACTGCTACAGCAATCCCCCATTTGAAGGTATTGAAGCACTGATCAACACGGCGAAAACCGGTACTTCTGGCAAGATGGGCAAGGGAGCCGGCATGCCATGCACGCTATGCCCTCACCCTAGTTGCCCGAATTCTCTGGTTTCCCAGGGTGTATGTGCTTGCCCAGAGTGCAGTGGGACACTTGTGTTAGACCCAGTAAGTGCTCCCAAGTGGAGACTTTTTTGCAACATGTGCAACTGCCTTGTTTTTCTTCCACAAGGTGCTCATAGAATCTCCACAACTAGAGAACGTTGCTCTGAATGTGACTCTTCAATCATAGAAGTAGACTTCAACAAGAAAACAACCCCTCTTGAAGATGGATCTACATTGCACCGTGGTTGTATTCTTTGTGATGAGTTGCTTCATTCCCTTATCGAGATGAAGCATGGAAGAGGCTTCAGGAGTTCAAGAGGAAGAGGAAGAGGAAGAAAAGTTGGATACAGGGGTAGAGGAAGAGGTGGGAAAATGATGGATCCAAAAATGAGTTTCAGAGATTTCTAA 2577 0.4241 MPPPKVLMVAEKPSIALAIASVLSHGQMFTRRGSTEVHEFEGMFRDSPAHFKVTSVIGHVFSLDFPAKYQDWSATDPFDLFQAQVVKNESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVLESSGFNIRDAYRARFSSVTEKDVLKALDNLVKPNRAESLAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQMNTFKPEKFWSLHPYIFHNGYEIQLEWQRGKLFDINVAMMFQKLVAQDGVLKVTEMSEKQETKARPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGYISYPRTESTAYPPSFDFRGALSAQANNPTWGNYVQGLLTNGYHKPRSGTDVGDHPPITPMRSAAEDTLGNDAWKLYQYICQHFIGTVCPDCKYLRRKVEFSIGGESFHCTGHNVITKGFTAIMPWLAVSDKNLPSFIKGQKIEVSKMELYEGSTAPPDYLTESDLISLMENNGIGTDASIPVHINNICERNYVQVQAGRKLVPTTLGITLVRGYQTIDPDLCLPDIRSFIEQQITLIAKGQIDHHYVVQHVIQQFMQKFSYFVKKIEDMDALFEAQFSTLTESGRILSKCGKCLRYMKYISAQPPRLYCGTCEEVYDLPQKGIIKLYKELCCPLDNFELLLCSMPGPEGKSYPLCPYCYSNPPFEGIEALINTAKTGTSGKMGKGAGMPCTLCPHPSCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLFCNMCNCLVFLPQGAHRISTTRERCSECDSSIIEVDFNKKTTPLEDGSTLHRGCILCDELLHSLIEMKHGRGFRSSRGRGRGRKVGYRGRGRGGKMMDPKMSFRDF 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1360 858 CDD TOP1Ac 157 582 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 PANTHER DNA TOPOISOMERASE 3-BETA-1 4 835 - -
Lal21g1360 858 Gene3D - 2 161 - -
Lal21g1360 858 MobiDBLite consensus disorder prediction 824 858 - -
Lal21g1360 858 Pfam Toprim domain 6 145 IPR006171 -
Lal21g1360 858 Gene3D Topoisomerase I, domain 4 287 412 IPR013826 -
Lal21g1360 858 SMART toprim5 5 136 IPR006171 -
Lal21g1360 858 ProSiteProfiles Toprim domain profile. 5 145 IPR006171 -
Lal21g1360 858 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 622 IPR023405 -
Lal21g1360 858 SMART topIaneu2 279 534 IPR003602 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 MobiDBLite consensus disorder prediction 826 842 - -
Lal21g1360 858 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 316 330 IPR023406 GO:0003917
Lal21g1360 858 Gene3D Topoisomerase I, domain 2 168 582 IPR013824 -
Lal21g1360 858 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 PRINTS Prokaryotic DNA topoisomerase I signature 203 221 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 PRINTS Prokaryotic DNA topoisomerase I signature 321 330 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 PRINTS Prokaryotic DNA topoisomerase I signature 398 414 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 PRINTS Prokaryotic DNA topoisomerase I signature 496 510 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 Gene3D Topoisomerase I, domain 3 227 480 IPR013825 -
Lal21g1360 858 CDD TOPRIM_TopoIA_TopoIII 5 158 IPR034144 -
Lal21g1360 858 MobiDBLite consensus disorder prediction 843 858 - -
Lal21g1360 858 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 835 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lal21g1360 858 SMART topIban2 137 233 IPR003601 GO:0003677|GO:0003916|GO:0006265
Lal21g1360 858 Pfam DNA topoisomerase 161 571 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1360 Lal-Chr21 16998489 17008166 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1360 K03165 - gmx:100791807 1583.93