Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1358 ATGCCCATGTTCTCTGCAACTCTGGGCTCTTCAATCTTCTTCTACCATTCTTCTTCTTCTTCCATTCAAACTTCTTTGACTTTCCCAAAATGCCCTTACAAGTTTCATTGTATTAATACCAATAGCACTAGTAGTATAGAAATTGAAGAAACTGGAATCCTTCACCGCCCTCCTTTGGTTACTGATCTTGACCAAACCCAACTTGCTATTCGTCAAGCTCGGAGATCATCAGATTGGAAGGCTGCAAATGCATATAAAGAGAGTTCAATAATCTACAATGGCAGAGTTGAAGACTCTAATGCTGGAGGCTTATTAATTCGTTTCTTTTCTATTTTGGGTTTTCTCCCTTTCCCACAGTTAAGTCCATCACATGCATCTAAAGAACCTCACAAAACTATCCAAGACATTGCAAAAAGTTTGGTTGGTTCTATCTTATCCATGAAGGTAATTGTGGCTGATGAGGATAACAGGAAATTGATCTTCTCTGAAAAGGAAGCTGCCTGGTCTAAATTTTCTGGACGGGTCAAGGTAGGAGACATTTTTGAAGCAAGAGTTGGTTCTGTTGAAGATTATGGTGCTTTTGTTCACTTGCGCTTCCCCGATGGTCATTATCGACTTACTGGACTAGTACACATCTCAGAAGTGTCATGGGATCTAGTTCATGATGTAAGAGACATCTTAACAGAAGGTGATAGATTGAGGGTTAAAGTTATCAATGTTGATAGAGAAAAATCAAGGATTAAACTGTCAATTAAACAGTTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGATTCAGCAGTTTCTGATTCTTTGAACGATGAGGATGGCAGTGTTATTGAGCCTCTTCCAGGACTTGAAACAATCCTTGAAGAGCTACATAAGGAAGATGGTATATTTAATGCAAGAATCAGTCGTCAAGGGTTTGAAAAACGTGTTGTCTCACCAGACTTGCAGCTTTGGCTTTCCAATGCACCTCCTTCAAACCAAAGGTTTACTCTCCTTGCTAGAGCTGGAAGACAGGTGCAGGAGATTCACTTAACTACATCCCTTGATCAGGAAGGTATCAAAAGGGCATTACAACGAGTATTGGAGCGTGTTCCCTGA 1125 0.4009 MPMFSATLGSSIFFYHSSSSSIQTSLTFPKCPYKFHCINTNSTSSIEIEETGILHRPPLVTDLDQTQLAIRQARRSSDWKAANAYKESSIIYNGRVEDSNAGGLLIRFFSILGFLPFPQLSPSHASKEPHKTIQDIAKSLVGSILSMKVIVADEDNRKLIFSEKEAAWSKFSGRVKVGDIFEARVGSVEDYGAFVHLRFPDGHYRLTGLVHISEVSWDLVHDVRDILTEGDRLRVKVINVDREKSRIKLSIKQLEEDPLLETLDKVIPQDDSAVSDSLNDEDGSVIEPLPGLETILEELHKEDGIFNARISRQGFEKRVVSPDLQLWLSNAPPSNQRFTLLARAGRQVQEIHLTTSLDQEGIKRALQRVLERVP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1358 374 ProSiteProfiles S1 domain profile. 178 252 IPR003029 GO:0003676
Lal21g1358 374 SUPERFAMILY Nucleic acid-binding proteins 176 265 IPR012340 -
Lal21g1358 374 SMART S1_6 176 252 IPR022967 -
Lal21g1358 374 SMART S1_6 87 164 IPR022967 -
Lal21g1358 374 Gene3D - 172 254 IPR012340 -
Lal21g1358 374 PANTHER OS03G0844900 PROTEIN 13 374 - -
Lal21g1358 374 Pfam S1 RNA binding domain 175 252 IPR003029 GO:0003676
Lal21g1358 374 Coils Coil 237 257 - -
Lal21g1358 374 SUPERFAMILY Nucleic acid-binding proteins 91 164 IPR012340 -
Lal21g1358 374 Gene3D - 79 171 IPR012340 -
Lal21g1358 374 ProSiteProfiles S1 domain profile. 89 164 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1358 Lal-Chr21 16984569 16988370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1358 - - ahf:112740919 516.153