Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1326 ATGGCAGCAACCATAGCAACAATGGCAATGATCAACCCTATGAAGGTTACAACACCATCAAAACCTACTTCCAACCTTTCCATGCACACCATCCCAAAGGGTCTTCTAGCCTCAACAAAACTCCCTGAAAAAACCAACATGCAAACAACTTCAATTTCCATAGCAGGAAGTGCTATTGCTGGTGCTATTTTCTCATCACTTGGAACCTGTGATGCTGCTTTTGCTGCACAACAATTAGCTCAAATAGCAGAAGGTGGTGATAACCGTGGCATAGCACTTTTGTTACCTATAATTCCAGCCATAGCATGGGTGCTATTCAACATCTTTCAGCCAGCACTTAACCAAATCAACCGCATGAGAAGCATCAAGGGTGTTATCATTGGTCTTGGTCTTGGTGGGTTGTTGGGGGCATCAGGTTTATTGTCAGCACCTGATGCATCAGCTAGTGAAATGGCTGTGATTGCTGATGCTGCTGCTGCTGCTGCTGCTGGTAGTGACAATAGGGGTCAGCTTCTGCTGATTGTGGTTGCACCTGCTATTCTTTGGGTGCTTTACAACATTTTGCAGCCTGCTTTGAACCAGCTCAACAAGATGAGATCCCAGTAG 606 0.4538 MAATIATMAMINPMKVTTPSKPTSNLSMHTIPKGLLASTKLPEKTNMQTTSISIAGSAIAGAIFSSLGTCDAAFAAQQLAQIAEGGDNRGIALLLPIIPAIAWVLFNIFQPALNQINRMRSIKGVIIGLGLGGLLGASGLLSAPDASASEMAVIADAAAAAAAGSDNRGQLLLIVVAPAILWVLYNILQPALNQLNKMRSQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1326 201 Pfam Photosystem II protein Y (PsbY) 166 198 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lal21g1326 201 Pfam Photosystem II protein Y (PsbY) 87 119 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lal21g1326 201 Hamap Photosystem II protein Y [psbY]. 87 121 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Lal21g1326 201 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 201 - -
Lal21g1326 201 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 201 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1326 Lal-Chr21 16623615 16624220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1326 K02723 - qsu:112015924 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1281 14 14549468 14550070 Lal21g1326 21 16623615 16624220 PCT