Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1322 ATGAATCCATTATGCTGCATTGCTCCAGTTTCAATCGATCGTGACCGTACAAACCCCGTCGTAGCTAAACCAATTCACTTAGGTCTCGATTCGTCGTTAAAAACCGTTACCTACACTTCAAAATCGAGTTTATCAGCTCAAGATTCATCTCTAGATGATGAAGAAGACGTAGAAGTTCGTGATTCAAAGGTTAATGGTGGTGTTGGTGGTAGTGTAGCTGGTATATTGTATAAATGGGTGAACTATGGTAAAGGATGGAGATCGCGGTGGTTTGTGCTTGAAGATGGTGTTCTTTCTTATTATAAGATTCATGGACCTGATAAGATCTTGGTGAAGGATCGGAGTATGAGAGTGATTGGTGATGAATCGGTGAGGTTTTTGAAGAAAGCAAATTGGAATAGTGTGAATCGAGGTGGTGGTAGTGTTAACAAGCAATGTAAACCGTTTGGTGAGATACATTTGAAGGGGAAGTACCCACCAGTGGGTGGGCCCAGGGGATCCTCAAGTATCCCCCTACACGTGCCACACGAGGAGTGGGAGAGGAGGAGAAAGGGGGAAGTGTGCATTGCTAGGGTTTCTTCAATTCGTGCAAGCAAATCCGATGATAAGCGACTTTCCATTTTTACTGGAACAAAAACTCTCCACTTGCATTGTGTATCCAGAGATGACAGAGCCATGTGGATTGAGGCTCTGCAATCGGCAAAAGACCTTTTTCCTAGAGCTCTATCAAGTAGCGATCTTTCAACCTCAGAAGATATTGTAGTTTCAACAGAGAAGCTGCGATCACGATTGTCACAGGAAGGCATAAGTGAAACTGTTATCAGTGACTGTGAGAATATTATGCTCTCAGAAGTTTCTTATCTTCAAGGCAAGTTGAAGTTTCTTCATCAGAAACATCATATGTTGCTGAACACCTTAAAGCAACTGGAGTTTCCTCTAGCTGTTCTGAGTCTGGTGGCTTTAGATACAGAGAAAATAGAGTTGGAAACTACTGTGGTGGATGAAACAAAGGAACGCGAGTCGTATTGTGGACAAGCTAGAAGGTTCAGCGGTGAGCATGCTTTTGCATGTGGTAGCAATCCACTTACTCCTTCACCTTGTCATGTCTCAGATTTCTATTCTGTTATGTCGGAGGGCAGTGCTACTGATTCTGTAGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAAACTGATGATGAAGATGGAGCATATTTTGATACGAATGAGTTTTTGTCTTCAGATGCCTTAAGGAGCGCTTCTTATCGAAGTAGGGAAGGTACTGGAAATGCCAATATATACAATAAAGATTTTATTCATTATGATGGCTTATATGGGTTTGAGAAGGAGATCAAAGATGTTAGTTATCCATATGTTCAAAGAAGAGATAACTTACCAGAGCCAAAAGAGAAAGAGAAGCCTCTTGGCTTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAGTGTTTTGAAGACCTGGAGTATTCATACCTTGTTGATAGAGCATTGGAGTGGGGAAAGCAGTGTTTCGACTGCTTAAAATTACCTGTGTACACTGATACTAGAGGCGTGAACAATGGGATTCTAGCTGAAAGGATAGGCTCTGGTGTTGCTTTTTACAGGAGTGGGAATGATTTGATGAGAATTCTAAATATTGCAGCTTTTGCTGTGTCTAGCTATGCATCAACTGAAGGTCGACAGTGCAAACCTTTCAATCCCTTACTTGGAGAGACCTATGAAGCTGACTATCCAGATAAGGGGCTCAAGTTTTTTTCTGAAAAGGTTAGTCATCATCCGATGGTTGTTGCTTGTCACTGTGAGGGAAGAGGTTGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAATTCTGGGGACGTTCTATTCAGTTAGATCCAGTGGGTGTCCTCACCCTACAATTTGAGGATGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATCATACTGGGTAAAATTTATTGTGACCACTATGGTACCATGTGCATCAAGGGAAGTGGCAACTACTCCTGCAAACTGAAGTTCAAAGAGCAATCTATCATAGACCGAAACCCACATCAGGTACATGGGTTTATTCAAGACAACAGAACCGGAGAGAAGGTAGCAATGTTAATTGGGAAGTGGGATGAAGCAATGTACTACGTCCTTGGGGATCCAACTACAAAGCCAAAAGGTTATGATCCAATGACAGAAGCTGCATTATTGTGGGAAAGGGGCAACTGTGCTACCAAGACAAGATACAACCTCTCTCCTTTTGCAATATCCTTAAATGAAATAGTGCCTGGCTTATCAGAGAAGTTGCCTCCAACCGACTCAAGGTTGAGACCAGATCAAAGACATTTAGAAAACGGAGAGTATGAGCTGGCAAATGCAGAGAAACTAAGACTTGAACAGCTGCAGAGACAGGCAAGAAAGATGCAGGAAAGAGGATGGAAGCCGAGATGGTTTCAGAAGGACGAGGATGGTTCTTACAGATATAAAGGTGGCTACTGGGAAGCGCGAGAAAATACTAATTGGGACGATATCCCTGATATATTTGGACAGAGTTGTGATTTGCCTTCATGCTCTGAAGAGACTGTATCCTAA 2673 0.4212 MNPLCCIAPVSIDRDRTNPVVAKPIHLGLDSSLKTVTYTSKSSLSAQDSSLDDEEDVEVRDSKVNGGVGGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILVKDRSMRVIGDESVRFLKKANWNSVNRGGGSVNKQCKPFGEIHLKGKYPPVGGPRGSSSIPLHVPHEEWERRRKGEVCIARVSSIRASKSDDKRLSIFTGTKTLHLHCVSRDDRAMWIEALQSAKDLFPRALSSSDLSTSEDIVVSTEKLRSRLSQEGISETVISDCENIMLSEVSYLQGKLKFLHQKHHMLLNTLKQLEFPLAVLSLVALDTEKIELETTVVDETKERESYCGQARRFSGEHAFACGSNPLTPSPCHVSDFYSVMSEGSATDSVADNESQDGADVETDDEDGAYFDTNEFLSSDALRSASYRSREGTGNANIYNKDFIHYDGLYGFEKEIKDVSYPYVQRRDNLPEPKEKEKPLGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALEWGKQCFDCLKLPVYTDTRGVNNGILAERIGSGVAFYRSGNDLMRILNIAAFAVSSYASTEGRQCKPFNPLLGETYEADYPDKGLKFFSEKVSHHPMVVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMCIKGSGNYSCKLKFKEQSIIDRNPHQVHGFIQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERGNCATKTRYNLSPFAISLNEIVPGLSEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEQLQRQARKMQERGWKPRWFQKDEDGSYRYKGGYWEARENTNWDDIPDIFGQSCDLPSCSEETVS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1322 890 ProSiteProfiles PH domain profile. 69 236 IPR001849 -
Lal21g1322 890 SUPERFAMILY PH domain-like 72 236 - -
Lal21g1322 890 Gene3D - 807 877 - -
Lal21g1322 890 Gene3D - 596 762 - -
Lal21g1322 890 SUPERFAMILY Oxysterol-binding protein-like 471 877 IPR037239 -
Lal21g1322 890 Coils Coil 818 838 - -
Lal21g1322 890 Pfam Pleckstrin homology domain 74 233 - -
Lal21g1322 890 SMART PH_update 70 238 IPR001849 -
Lal21g1322 890 Pfam Oxysterol-binding protein 477 864 IPR000648 GO:0008289
Lal21g1322 890 Gene3D - 70 238 IPR011993 -
Lal21g1322 890 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 557 880 - -
Lal21g1322 890 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 532 - -
Lal21g1322 890 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 557 880 IPR000648 GO:0008289
Lal21g1322 890 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 532 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1322 Lal-Chr21 16590631 16598327 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1322 K20456 - gmx:100817856 1347.41