Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1280 ATGGATTCCCATGATAAACCTGTTGTCCTTATCACCGGTTGTTCTCACGGAGGAATAGGCCACGCGCTCGCACGCGCCTTCGCAGCGAATAATTGTGCAGTGGTTGCTACGAGCAGGTCACGGTTGAGCATGGAAGACATGAAGAATGATGAGAGATTTTTATTGGAAGAATTGGACGTTCAATCAAATGAATCCGTACGAGAAGTGATAGAACATGTTATTCATAAGTTTGGTCGAATCGATGTACTTGTTAACAATGCGGGTGTTCAATGTGTGGGCCCACTTTCTGAGATTCCTCTTTCTCAATTTCAAACCACTTTTGATACTAATGTCTATGGTTCCTTGAGAATGGTTCAAGCTGTTGTTCCTCATATGGCTAATAGAAAAAAGGGAAAGATTGTGAATGTTGGCAGTGTTGCTGCTTTGGCCTCTGGACCATGGTCAGGAGCTTACACTTCATCCAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGAATGGAACTAAGTCATTTTGGAATTGATGTTATCAATGTTGTCCCTGGAGCTATCAAGTCTAATATCGGAAAGGCGGCTATAGCTGGCTACAGCCGAATGCCGGAGTGGAAACTATTCAAGCCTTTTGAAGCAGCAATCAGAGAGAGAGCTTATTTTTCTCAGACATCAAAGTCAACACCTACAGATGAGTTTGCTATGAACACTGTAGCTGCTGTGTTGAAGAAGAACCCTCCTGCATGGTTCACTTATGGCAAATACTCTACTGCTATGGCCATTATGTACCATTTGCCACTCTCTATTAGAGACTTTATTTTGAAGAAAACAATGAAATGTTGA 834 0.4209 MDSHDKPVVLITGCSHGGIGHALARAFAANNCAVVATSRSRLSMEDMKNDERFLLEELDVQSNESVREVIEHVIHKFGRIDVLVNNAGVQCVGPLSEIPLSQFQTTFDTNVYGSLRMVQAVVPHMANRKKGKIVNVGSVAALASGPWSGAYTSSKAALHALTDTLRMELSHFGIDVINVVPGAIKSNIGKAAIAGYSRMPEWKLFKPFEAAIRERAYFSQTSKSTPTDEFAMNTVAAVLKKNPPAWFTYGKYSTAMAIMYHLPLSIRDFILKKTMKC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1280 277 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 270 IPR036291 -
Lal21g1280 277 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 138 166 IPR020904 GO:0016491
Lal21g1280 277 Gene3D - 6 270 - -
Lal21g1280 277 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 IPR002347 -
Lal21g1280 277 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 IPR002347 -
Lal21g1280 277 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 IPR002347 -
Lal21g1280 277 Coils Coil 44 64 - -
Lal21g1280 277 CDD 17beta-HSD-like_SDR_c 8 253 - -
Lal21g1280 277 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 5 275 - -
Lal21g1280 277 Pfam short chain dehydrogenase 8 191 IPR002347 -
Lal21g1280 277 PANTHER BNAC02G00550D PROTEIN 5 275 - -
Lal21g1280 277 PRINTS Glucose/ribitol dehydrogenase family signature 9 26 IPR002347 -
Lal21g1280 277 PRINTS Glucose/ribitol dehydrogenase family signature 78 89 IPR002347 -
Lal21g1280 277 PRINTS Glucose/ribitol dehydrogenase family signature 125 141 IPR002347 -
Lal21g1280 277 PRINTS Glucose/ribitol dehydrogenase family signature 151 170 IPR002347 -
Lal21g1280 277 PRINTS Glucose/ribitol dehydrogenase family signature 172 189 IPR002347 -
Lal21g1280 277 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1280 Lal-Chr21 16065725 16070685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g1280 5 188 Acyl Lipid Metabolism Gene Families AT1G24360 31.579 5.79e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1280 - - gmx:100789660 444.121