Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0582 ATGTTCACCTCCACTCACTTGAACAACAACGACACTCCCTTCAGCGGTGGCGGCATCCGTGCCACATTCTCATCCTTGATGGCTGCGGCGGCCATTCAATCCTCTCCGGCAGTGGTAGTCACGGCAGTAGCTGGAATCGCTGTCGTCGCAGTCATCTTCTTCTACGGTGCCAGTAGGCGAGGTCACAAGTCATCTTCAAATTCTTCTCCTTCGTCATCGTCTTGGAATCATTTGCGTTCGGTTCTATTCGTTGTTACTTCTTCTTCACCAGCTTCTTGTTCATCATCTTCTACTGATCGGGGTCGTCTGAAGTCACCATGGTCACGCAGGAAAAGAAAACATCTCCTTTCATGTCATAAATGGAAAAGCTTATTCACACAAGATGGTAGACTCCATGATGGTGGAATTAAGTTCCTGAAAAGAGTTCGCAGTGGAGGTGTTGATCCCAGTATTAGGGCTGAAGTTTGGCCGTTCCTACTTGGAGTGGCAAGTATTGATTTTGGGAATGGGCCCTCTAGATTGCCTTTTCTAGTCAAATGCTATAACTTGGACAGTACCAAAGCAGAACGAGATGTTATAAAAACTCAAAATAGAAAGGAATATGAGAAACTCCGGAGACAGTGCCGACAGCAGCTAAAGCAGAGCAATGGAAGCTTCAAGTTAAATGAAAGTGGCGAAGTCAGCTATGAAAGAGACGGTGCAAGTCTTGTTCAAGATTCAGGTTCTGAAGATGCAATGAGTGCCAGGGAATCCCTTTCTAGTGAGGAAAGGAGCCCAGATACTGAATATTGGGATGATCCATCTAGTGCCCTGCTGGAAGTTAGCAATGCTGATACCTTCACACTGGATACTGATTCCTCTGATTCAGACTCCTCAGAAGGTCTGGAGGTGATTCAGGCATTTCCTTCTGATGTTGTCCGGGAAGATAACAATTCCAAGGAAAATTCTTCTCCCTCCCAAAGGAAAGTTCCATCAAAACTACGAACTGATGAAGATTTTCGCACATGGCAACGAATCATCCGACTAGATGCGGTTCGTGCCAATGCAGAATGGATGCCATACTCCCCCTCCCAAGCTATTGTAACGGACAGTAGGGCACACCGTTCTGCTGAGGCTGTTGGCTTGAAGGATTATGATCACCTAGAGGCCGGCAGAATCTTTCATGCTTCTCGACTAGTTGCTATTCTTGAAGCATATGCACTATACGACCCTGAAATTGGCTACTGCCAGGGTATGAGTGATCTGCTATCTCCCATAATTAGTGTTATACCAGAAGATCACGAGGCTTTCTGGTGTTTTGTTGGATTCATGAAGAAGGCAAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATATAGTTGCAAAAATTATCAAGTTTAAGGATGCCCACTTGTTTAGACATTTGGAGAAGCTCCAAGCCGACGACTGCTTTTTCGTGTATAGGATGGTGGTCGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGGGCAGGTATTGGGAAATCTGCATGGAGCAGAATTAGGCAGCGTGCTCCGCCAACAGATGATTTATTGCTTTATGCCGTAGCAGCCTCGGTGCTACAGCGGAGGAAATTAATTATCGAGAAGTATAGCAGTATGGATGAGATCATCAAGGAATGCAATGGCATGGCAGGACATCTTGATGTTTGGAAGTTGCTAGATGATGCACATAACTTGGTGGTCACCCTTAATGACAAAATGAAATTGAGACCTCATTCTGATGATTGA 1809 0.4538 MFTSTHLNNNDTPFSGGGIRATFSSLMAAAAIQSSPAVVVTAVAGIAVVAVIFFYGASRRGHKSSSNSSPSSSSWNHLRSVLFVVTSSSPASCSSSSTDRGRLKSPWSRRKRKHLLSCHKWKSLFTQDGRLHDGGIKFLKRVRSGGVDPSIRAEVWPFLLGVASIDFGNGPSRLPFLVKCYNLDSTKAERDVIKTQNRKEYEKLRRQCRQQLKQSNGSFKLNESGEVSYERDGASLVQDSGSEDAMSARESLSSEERSPDTEYWDDPSSALLEVSNADTFTLDTDSSDSDSSEGLEVIQAFPSDVVREDNNSKENSSPSQRKVPSKLRTDEDFRTWQRIIRLDAVRANAEWMPYSPSQAIVTDSRAHRSAEAVGLKDYDHLEAGRIFHASRLVAILEAYALYDPEIGYCQGMSDLLSPIISVIPEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDAHLFRHLEKLQADDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLYAVAASVLQRRKLIIEKYSSMDEIIKECNGMAGHLDVWKLLDDAHNLVVTLNDKMKLRPHSDD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0582 602 Pfam Rab-GTPase-TBC domain 390 511 IPR000195 -
Lal21g0582 602 Coils Coil 194 214 - -
Lal21g0582 602 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 449 587 IPR035969 -
Lal21g0582 602 SMART tbc_4 143 538 IPR000195 -
Lal21g0582 602 ProSiteProfiles TBC/rab GAP domain profile. 146 512 IPR000195 -
Lal21g0582 602 MobiDBLite consensus disorder prediction 215 266 - -
Lal21g0582 602 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 311 444 - -
Lal21g0582 602 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 122 472 IPR035969 -
Lal21g0582 602 MobiDBLite consensus disorder prediction 301 328 - -
Lal21g0582 602 PANTHER GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN 63 163 - -
Lal21g0582 602 PANTHER GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN 175 594 - -
Lal21g0582 602 Gene3D - 448 595 - -
Lal21g0582 602 MobiDBLite consensus disorder prediction 249 263 - -
Lal21g0582 602 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 63 163 - -
Lal21g0582 602 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 175 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0582 Lal-Chr21 4335755 4341582 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0582 - - gmx:100793557 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0582 21 4335755 4341582 Lal21g0582 21 4335755 4341582 ECH