Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0537 ATGGGTGTGAGTGCTGCTTCCGTACTGAAGCACCTCCTCCACCACCGTAACCTGAAGCCACTACCACCCACCGCCACCACCTCCACCGCCGCAGTAACCACCAAAATCCTCACATACCTTAAAGCAGGTCGCATCCGAAAAGCAGCCTCTACCCTCTTCGCTTTCCCAGAACCCTTCCCCTACGACCTCTACGCTCACCTCTTCCGCGCGTGCTCCCTCCACCGCCACGCCATTGTCGAAGCCCGCAAGGTCGAGTCCCACCTCCTCACCTTCTCCCCCTACCCTCCAATTTTTCTCCTCAACCGCGCCATTGAAGCTTATTCGAAATGCGGCTCTCTCCGCGATGCAAGGGAACTGTTTGATGAAATGCCTCAACGAGATGGTGGTACTTGGAATGCCCTCATCACAGCTTATTCTCAATTTTGTTTCTCAAATGAAGCTTTAAACCTTTTTCTGTGTATGAATAGGAGCGGTATTCGTGCTAATAAGATCACCTTTGCTGGTGTTCTTGGATCATGTGCTGTTGCTGGTGAACTTCTGTTGTCAATGCAGGTTCATGGGATGGTTACAAAATTTGGTTTTTGTGGCAATGTGATATTGGAGAGTTCACTTGTCGATGTTTATGCGAAATGTGGGGTTATCGTTGATGCGCGCAAGATGTTTCACGAGATTCTGCATCCCAATGCAGTCACTTGGAATGTCATTGTGAGAAGGTATCTTGATGTTGGCAACGCGAAGGAAGCGGTTTTCATGTTCTCTCGGATGTTTCCGTCTGCGGTTAGGCCATTGAATTTCACCTTCTCAAATGCGCTTGTTGCTTGTTCGAGTATAGCTGCGCTTGAGGAGGGGATGCAAATACATGGAGTTGTTGTGAAGTTGGGTCTCCAAGAGGATAATGTTGTTTCGAGCTCGCTTGTCAACTTGTATGTGAAGTGTGGTAAACTAGAGGATGGTTATGAGGTATTTAATCAGCTTGGTTCAAAGGATTTGGTGTCTTGGACTTCAATTGTATCAGGGTATGCTATGAGTGGGAAAACTTGGGAGGCTAGAAAACTTTTTAATGAGATGCCTGAACGTAATGTAATCTCATGGAATGCGATGCTGGCAGGGTATACTAGGTTTTCTGAATGGTATGAGGCGTTAGATTTTGTACATCTGATGCTTAATACAATTAAAGATTTGGATCATGTCACTCTTAGTTTGATGTTAAATGTCTCTGCAGGCCTGTTAGATCATGAAATGGGGAAGAAGGTTCATGGCTACATCTATCGGCATGACTTACACTCGAACCTTATGGTCGGCAATGCCCTTCTTGACATGTATGGAAAATGTGGGAACTTGAACAGTGCCAGAGTTTGGTTTAACCAGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTGTTGGCTACCTATGGTAATCATCATTTAAGTGAACAAGCGCTAACAATATTCTCAGAGATGCAGTGGGAGACAAAACCAACTAAGTATACATTTGGAACCCTTTTGGCAGCATCGGCTAATACCTTTTCTCTTTACCTTGGTAAACAAATTCATGGATTCATCATTAGACATGAATTTCAGATAGATACTATAATCAGAACTGCTTTGGTTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTATTGAGGTTCTTAAGGGGGCAGTTTCCAGGGATGTGATTATTTGGAATACCATAATCTTGGGATGCTGTCACAATCATAGGGGTAAAGAGGCGCTTGAACTTTTTGGTGTAATGGAAGCAGAAAACATCAAGCCAGACCATGTGACCTTTCATGGCATTCTGCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTATGGTGCCAAATGCTTTAAATCAATGAGTAATGAATACTGTGTCCTGCCTCGGCTTGAACATTATGACTGCATGATTGAACTCTACAGTCGGCATGGTTACATGGATGAGCTTGAGAAATTTATCAAGACAATGCCAATAGAGCCCACTATTTCTATGTTGACAAGAGCCCTTAACGCGTGCCAGAAAAATGAGCATGCAAGATTAGGTGAATGGATTACAGAAAAGATTAATGAATTTCAACATTAA 2094 0.4389 MGVSAASVLKHLLHHRNLKPLPPTATTSTAAVTTKILTYLKAGRIRKAASTLFAFPEPFPYDLYAHLFRACSLHRHAIVEARKVESHLLTFSPYPPIFLLNRAIEAYSKCGSLRDARELFDEMPQRDGGTWNALITAYSQFCFSNEALNLFLCMNRSGIRANKITFAGVLGSCAVAGELLLSMQVHGMVTKFGFCGNVILESSLVDVYAKCGVIVDARKMFHEILHPNAVTWNVIVRRYLDVGNAKEAVFMFSRMFPSAVRPLNFTFSNALVACSSIAALEEGMQIHGVVVKLGLQEDNVVSSSLVNLYVKCGKLEDGYEVFNQLGSKDLVSWTSIVSGYAMSGKTWEARKLFNEMPERNVISWNAMLAGYTRFSEWYEALDFVHLMLNTIKDLDHVTLSLMLNVSAGLLDHEMGKKVHGYIYRHDLHSNLMVGNALLDMYGKCGNLNSARVWFNQMSNWRDRVSWNALLATYGNHHLSEQALTIFSEMQWETKPTKYTFGTLLAASANTFSLYLGKQIHGFIIRHEFQIDTIIRTALVYMYSKCRCLEYAIEVLKGAVSRDVIIWNTIILGCCHNHRGKEALELFGVMEAENIKPDHVTFHGILLACVEEGLVEYGAKCFKSMSNEYCVLPRLEHYDCMIELYSRHGYMDELEKFIKTMPIEPTISMLTRALNACQKNEHARLGEWITEKINEFQH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0537 697 Pfam PPR repeat family 561 608 IPR002885 -
Lal21g0537 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 126 IPR002885 -
Lal21g0537 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Lal21g0537 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Lal21g0537 697 Gene3D Tetratricopeptide repeat domain 182 259 IPR011990 GO:0005515
Lal21g0537 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 130 159 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 464 490 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 103 126 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 230 255 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 435 458 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 362 388 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 202 224 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 303 328 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 331 361 IPR002885 -
Lal21g0537 697 Pfam PPR repeat 636 660 IPR002885 -
Lal21g0537 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 571 695 - -
Lal21g0537 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 483 - -
Lal21g0537 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 498 570 - -
Lal21g0537 697 Gene3D Tetratricopeptide repeat domain 413 513 IPR011990 GO:0005515
Lal21g0537 697 Gene3D Tetratricopeptide repeat domain 62 181 IPR011990 GO:0005515
Lal21g0537 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 483 - -
Lal21g0537 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 498 570 - -
Lal21g0537 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 571 695 - -
Lal21g0537 697 Gene3D Tetratricopeptide repeat domain 260 412 IPR011990 GO:0005515
Lal21g0537 697 Gene3D Tetratricopeptide repeat domain 514 627 IPR011990 GO:0005515
Lal21g0537 697 TIGRFAM PPR: pentatricopeptide repeat domain 331 361 IPR002885 -
Lal21g0537 697 TIGRFAM PPR: pentatricopeptide repeat domain 565 597 IPR002885 -
Lal21g0537 697 TIGRFAM PPR: pentatricopeptide repeat domain 104 126 IPR002885 -
Lal21g0537 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0537 Lal-Chr21 3906147 3908240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0537 23 696 Glycoside Hydrolase AT3G49170 27.988 1.10e-80 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0537 - - gmx:100775626 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0537 21 3906147 3908240 Lal21g0537 21 3906147 3908240 ECH