Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0534 ATGTCTCTCCTAACCCCCATTGAGTTGCAGAAGATTTTTGAGAAGATGGATATCAATGGTGATGGCTTTGTGAGCATTGAAGAGCTTAATTGGCTTCTTCAGAACATAGGTTTCAACTTCAGCTTAGAAGAGGTAGAATCTATTATGGAAAAGAAGAACCTTGACATGAGTGAGTTTTTGTTTTTTTACAACTCTATATCAAAGCAAAACAATGGTGATGATGAGAGTAGAAGTAATGGTGGTGATGAAAATAATATTCATGATCTTGTGGAAACATTCAAAGTGTTTGATATGAATGGTGATGGATTTATTAGTAGCCAAGAATTGGAGTGTGTTTTGAAGAGGCTTGGATTGTGGAATGGGAAGGATTGTAGAAGCATGATTTGCTTTTATGATACTAATTTTGATGGACAACTTGATTTTGAGGAATTCAAGAACATGATGTTGCTAAACATTTCATGA 462 0.3485 MSLLTPIELQKIFEKMDINGDGFVSIEELNWLLQNIGFNFSLEEVESIMEKKNLDMSEFLFFYNSISKQNNGDDESRSNGGDENNIHDLVETFKVFDMNGDGFISSQELECVLKRLGLWNGKDCRSMICFYDTNFDGQLDFEEFKNMMLLNIS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0534 153 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lal21g0534 153 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Lal21g0534 153 CDD EFh 8 60 IPR002048 GO:0005509
Lal21g0534 153 Gene3D - 85 151 - -
Lal21g0534 153 CDD EFh 88 148 IPR002048 GO:0005509
Lal21g0534 153 Pfam EF hand 8 33 IPR002048 GO:0005509
Lal21g0534 153 ProSiteProfiles EF-hand calcium-binding domain profile. 122 153 IPR002048 GO:0005509
Lal21g0534 153 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Lal21g0534 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Lal21g0534 153 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 151 - -
Lal21g0534 153 Pfam EF hand 131 148 IPR002048 GO:0005509
Lal21g0534 153 Pfam EF hand 89 110 IPR002048 GO:0005509
Lal21g0534 153 SMART efh_1 123 151 IPR002048 GO:0005509
Lal21g0534 153 SMART efh_1 8 36 IPR002048 GO:0005509
Lal21g0534 153 SMART efh_1 88 116 IPR002048 GO:0005509
Lal21g0534 153 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Lal21g0534 153 SUPERFAMILY EF-hand 8 149 IPR011992 -
Lal21g0534 153 Gene3D - 2 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0534 Lal-Chr21 3885527 3885988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0534 2 149 EF-hand Containing Proteins AT1G21550 40.789 2.74e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0534 K13448 - gmx:100500561 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0534 21 3885527 3885988 Lal21g0534 21 3885527 3885988 ECH