Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0498 ATGGATAGAGTGGTGCCATATATGGGTTCATTTTTTAGTGTGGCGAGTACTAAATCCAAATCTTATCGGAGTGAGTGGAATGAAATATCTCCAAATGAGGCATGTAAGAGGCAAAGGGTGTCAGCTACAACCTTTGTTGAAGAGAGTTCAAGACTAATTCCTCATCTCCCTGATGAGTTATCACTTCAGATTATTGCTAGACTTCCTCGAATTCGTTACCTAAATTTAAGGCTAGTTTCAAGGAAATGGAAGTTAACTATCACAAGTTCAGAACTATATAAAGTAAGAAAAGAACTCGGGACGATCGAAGAGTGGTTGTATCTGTTGATTAAAGATGAAGACAGTAAACTACACTGGCATTCATTAGATCCTCGTTCTCAGGTATGGGAGAGACTGCCTCCTATGCCCAGTTTTGTCGACGAAGAAGAATCTAGGAAGGGTTCTTCTAGAGTTTGGATGTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTCGGACGAAAGGATGCTTTCGATGAAATGCCCTTTTGCGGTTGTGCCATAGGAGCTGTCGCTGGATGTCTTTATGTTCTAGGTGGATTCTCCAAAACTTCAACTATGAGATGTGTCTGGAAATTTGATCCAATACAAAGTACATGGAGCAAAGTGACTTCTATGTCTAATGGCAGGGCATATTGTAAGACGGGTATCTTAGATAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCAGGACTTATTCCTCTTCAGTCTGCTGAAGTTTTTGACCCTTCTACAGAAACATGGTCAAATGTGCCTAGCATGCCATTCTCAAGAGCTCAAGTTCTACCGACTCCTTTTTTGGCTGACATGTTAAAGCCTATTGCCACAGGATTAACCTCATACATGGGAAGGTTGTGTGTTCCACAAAGTTTGTATGCTTGGCCATTTTTTGTTGATGTTGGAGGAGAAATCTATGACCCGGAAACAAACACGTGGATTGAAATGCCGAGTGGAATGGGTGAGGGTTGGCCTGCAAGACAAGCAGGTACAAAACTGAGTGTTGTGGTAGATGGTGAATTATATGCTTTAGACCCTTCTAGCTCTATTGAGAGTGGAAAAATTAAGGTATATGATCAAGGAGAAGATGCTTGGAAAGTTGTCATTGGAAAAGTGCCTATATATTATGCATCTGATTCAGACTCACCATATTTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACAAAAGATATCAATCATGACATTGTTGTTCTAAGGGCTGACTTGAGGAATAACTGGGACTCTTCTGCATCAACCACAACTTTATCAAACAATTCCTTGAATGAATTTCCAGAATCAACAGTTGATTCAGATGCTGTTGTTTGGAAAGTAGTTGCCAGCAGGTATTTTGAGCAGGCTGAATTAGTCAGCTGCCAAGTTATTGACATCTAG 1458 0.4067 MDRVVPYMGSFFSVASTKSKSYRSEWNEISPNEACKRQRVSATTFVEESSRLIPHLPDELSLQIIARLPRIRYLNLRLVSRKWKLTITSSELYKVRKELGTIEEWLYLLIKDEDSKLHWHSLDPRSQVWERLPPMPSFVDEEESRKGSSRVWMWNMVEGIRIAEVIRGFLGRKDAFDEMPFCGCAIGAVAGCLYVLGGFSKTSTMRCVWKFDPIQSTWSKVTSMSNGRAYCKTGILDNKLYVVGGVSQGQAGLIPLQSAEVFDPSTETWSNVPSMPFSRAQVLPTPFLADMLKPIATGLTSYMGRLCVPQSLYAWPFFVDVGGEIYDPETNTWIEMPSGMGEGWPARQAGTKLSVVVDGELYALDPSSSIESGKIKVYDQGEDAWKVVIGKVPIYYASDSDSPYLLAGFHGKLHVITKDINHDIVVLRADLRNNWDSSASTTTLSNNSLNEFPESTVDSDAVVWKVVASRYFEQAELVSCQVIDI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0498 485 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 485 - -
Lal21g0498 485 Pfam F-box-like 53 94 IPR001810 GO:0005515
Lal21g0498 485 Pfam Kelch motif 228 276 IPR006652 GO:0005515
Lal21g0498 485 Pfam Kelch motif 180 225 IPR006652 GO:0005515
Lal21g0498 485 Gene3D - 50 106 - -
Lal21g0498 485 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 11 485 - -
Lal21g0498 485 SMART kelc_smart 192 238 IPR006652 GO:0005515
Lal21g0498 485 SMART kelc_smart 239 289 IPR006652 GO:0005515
Lal21g0498 485 ProSiteProfiles F-box domain profile. 50 96 IPR001810 GO:0005515
Lal21g0498 485 SUPERFAMILY F-box domain 52 124 IPR036047 GO:0005515
Lal21g0498 485 SMART fbox_2 56 96 IPR001810 GO:0005515
Lal21g0498 485 SUPERFAMILY Kelch motif 112 416 IPR015915 GO:0005515
Lal21g0498 485 Gene3D - 110 394 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0498 Lal-Chr21 3532316 3534874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0498 47 274 Miscellaneous Gene Families AT4G33900 28.085 8.64e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0498 - - gmx:100806691 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0498 21 3532316 3534874 Lal21g0498 21 3532316 3534874 ECH