Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0471 ATGCTTCACCACCACTCGTTACTCTGCGTTTCAAGGCCTGTTACTCACTCTACACTCTTTGCTTCGGTTTTTCCCGGTGCTTCTTTTGCCGGAAATTCCTCTGGCCGTGACACCGGGTTGAAGTTTAACATGCAAGCATCAAGAAGCAAATCGAATAGTGGACATGGAATTTTTACTGAGACAAGGGATCGTGCCAAGCTTAGGACAACTAATATATCTGATGGTCGTGCTCGAGAAGGGGTGCTTGAGGAAGAAGCCTCCCAGTTGCTAGAGAGTGGACCATCATGGAAAATTTTCCCAGGCCAAGCATTTCCATTGGGTGTATCAGAAGTTGATAATGGGATCAATTTTTCTATTTTTTCACAGCATGCAACTGCTGTCACACTTCGTTTAGTCCTTCCCGATAGTGGAAGCACAGGCACATTGGATGGTGACATAATAGAAGTGGATTTGGATCCTCATTCGAACAAAACAGGGGACATTTGGCACATTTGTATTGAGGATCTTCCTCGGAGCAATGTTCTATATGGATATCGCATAGATGGACCTCAAGATTGGGGTAAGGGGCATCGATTTGACAGAAGCACTGTGCTTGTTGATCCTTATGCAAAACTAATTGAAGGTCGACGATATTTTGGGGATATTAGCATGAAGTTGTCAAAATTTCTCGGCACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTCCTGAGAAAGATCTTGTCATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGGTTGGATAGGAAAATTCGTGGAAGCTATCTTGGTGTGATTGACAAGATCTCACACCTTCTAGAGCTTGGTATCAATGCGGTAGAGTTGCTACCGGTCTTTGAATTTGATGAGTTGGAACTTCAAAGGTGGCGAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCAAGTGGTGGTGGAGGATCAATTAATGCTTCCCAAGAGTTCAAACTAATGGTTAAAGCTTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTATAATCATACTAATGAGGCTGATGATGCTAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAGTAATGGTCAATTGCTGAACTTCTCTGGCTGTGGTAATACATTGAACTGTAACCATCCTGTGGTCATGGAGCTCATTCTTGACAGTCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTTGCGAGTGTCCTTTGCCGAGGAACTGATGGTTCCCCCCTTAATGCCCCCCCACTTATTAGGGCAATTACTAAAGATGCAGTCTTATCGAGATGTAAGATTATTGCAGAGCCTTGGGACTGTGGCGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGAAAATATCGCGATGATGTACGCAAATTTATCAAGGGCGATTGTGGTATGAAGGGGGACTTTGCAACTCGTGTTTCTGGATCTTCTGATCTCTACAGAGTGAACAAGCGTAGGCCATATCATGGCATTAACTTTGTTATTGCACATGATGGGTTCACCTTGCATGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGAGGAAATGACGGATGCAATGATAATTTTAGCTGGAATTGTGGTTCTGAAGGGGAAACTGATGATGCTAGTGTAAGATCTTTAAGGTCACGACAAATGAAAAACTTTCATTTGGCATTAATGATATCCCAACTAGATGTGCGGAAGAGTGATCACTTCAGGTTTTTCTCCAAGGTGATAAAGTACCGGCGTGCACGTGAAGTATTCCGCCATGAAAATTTTATCAGCGAGAATGACATAACATGGCATGAAGACAACTGGGACAATTATGACAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGAGGAGGTGTCTATTTGGCATTCAATGCTCATGACCTATTTGTTAAAGTTCTGCTTCCTACACCTCCTACTAACAGGAGGTGGTTTCGTGTGGTGGACACTAATCTCAAATCTCCTGATGACTTTGTCCTTAATGGTGTCCCTTGCACAGAAACCACGTATAATATAGCTCCATATTCTTCTATTCTTCTTGAGGCCAAGTTTTAA 2229 0.4181 MLHHHSLLCVSRPVTHSTLFASVFPGASFAGNSSGRDTGLKFNMQASRSKSNSGHGIFTETRDRAKLRTTNISDGRAREGVLEEEASQLLESGPSWKIFPGQAFPLGVSEVDNGINFSIFSQHATAVTLRLVLPDSGSTGTLDGDIIEVDLDPHSNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDRSTVLVDPYAKLIEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNIPEKDLVIYEMNVRAFTIDESSGLDRKIRGSYLGVIDKISHLLELGINAVELLPVFEFDELELQRWRNPRDHMINTWGYSTINFFAPMSRYASGGGGSINASQEFKLMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDSNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAITKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDCGMKGDFATRVSGSSDLYRVNKRRPYHGINFVIAHDGFTLHDLVSYNFKHNEANGEGGNDGCNDNFSWNCGSEGETDDASVRSLRSRQMKNFHLALMISQLDVRKSDHFRFFSKVIKYRRAREVFRHENFISENDITWHEDNWDNYDSKFLAFTLHDKSGGGVYLAFNAHDLFVKVLLPTPPTNRRWFRVVDTNLKSPDDFVLNGVPCTETTYNIAPYSSILLEAKF 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0471 742 Pfam Alpha amylase, catalytic domain 274 388 IPR006047 GO:0005975
Lal21g0471 742 SUPERFAMILY Glycosyl hydrolase domain 648 741 - -
Lal21g0471 742 CDD AmyAc_Glg_debranch 233 636 - -
Lal21g0471 742 PANTHER GLYCOGEN DEBRANCHING ENZYME 84 740 - -
Lal21g0471 742 Gene3D - 649 742 IPR013780 -
Lal21g0471 742 Gene3D Glycosidases 229 648 - -
Lal21g0471 742 Gene3D Immunoglobulins 87 223 IPR013783 -
Lal21g0471 742 CDD E_set_GDE_Isoamylase_N 104 253 IPR044505 -
Lal21g0471 742 SMART aamy 253 600 IPR006047 GO:0005975
Lal21g0471 742 SUPERFAMILY E set domains 100 237 IPR014756 -
Lal21g0471 742 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 105 203 IPR004193 GO:0004553|GO:0005975
Lal21g0471 742 SUPERFAMILY (Trans)glycosidases 232 641 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0471 Lal-Chr21 3343466 3361833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0471 39 741 Glycoside Hydrolase AT4G09020 70.270 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0471 K01214 - gmx:100806342 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0471 21 3343466 3361833 Lal21g0471 21 3343466 3361833 ECH