Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0456 ATGAACCTTTGTTTTCAACTTCGTGGGTGCATAGTTGAGAAGGAACTTCATATTTCTATCACTGTTCTCAATTCTTATAATAATATTAATAATAAATATCTTATGATATTTGCAGTCAATCATAGCCACTTCATAAACTCTGGAATCTGTATACAATACCTCGATTTCATGAAAGTTTCAGTAACTTGCTTTAGCAGGCACAACTATGCCTCTTTGTCTCGGTCGTTGTCTTCATTGCCGTGGATATCTCCCCTTCAGTTAAAAAAAGCTGCAGAACCAAAACCAGATCCTCCACCTGAACCACCTATGGAAACTTGGAAGAAGCGCAATTATCTCTCTCATGAGACTGCTATTAACTTGATCAAACGAGAGAAAGATCCACAACATGCGTTGAAAATATTTAACATGGTATCTGAACAAAAGGGTTTCAATCACAATAATGCTACATATGCAACAATTCTCGAAAAGCTTGCTCAGTCAAAGAAGTTCCAAGCCGTTGATCGAGTGTTGCATCAAATGACTTATGAAGCTTGCAAGTTTCATGAGGGTATATTTATTAACCTCATGAAGCATTTTTCAAAATCCTCTATGTATGAAAAAGTGCTTCAAACATTCTTCAACATTCAGCCAGTAGTTCGTGAAAAGCCATCTCCGAAAGCCATTAGCACTTGTCTCAATCTCCTGGTTGATTCTAACCAGGTTGATTTGGCACGACAGTTGCTCTTGCATGCCAAAAGGAGTCTAACGCATAAGCCAAACGTCTGCGTATTCAATATTTTAGTGAAGTACCACTGCAAAAATGGAGACCTTGACTCTGCCTTTGAAGTTGTAGAAGAAATGAGGAACTCAAAGTTTTCCTACCCTAATTTAATTACATACTCAACCCTGATGAATGGCCTCTGTCAAAACGGAAGGCTCAAAGAAGCTTTTGAAATTTTTGAGGAAATGGTCTCAAAGGATAGGATTGTTCCTGATCCAATGACTTACAATGTTTTGATCAATGGATTTTGCCGCGGAGGTAAACCTAATCATGCTAGAAATGTGATTGAGTTTATGAAAAATAATGGATGTCGTCCTAATGTAATTAATTACTCTGCCCTCGTAAATGGTTTAAGTAAAGTGGGGAAACTGCAAGATGCTAAAGAAGTTTTTGCTGAGATGAGGAGCTCTGGTTTGAAGCCTGATACAGTTTGCTACACTTCTTTGATCAATTATGTTTGTAGAAATGGGCAAATTGATGAAGCTATAGAGTTGCTTAAAGAAATGAAGGAAAATGAATGCCAGCCTGATACTGTTACATTTAATGTGATACTTGGAGGTCTGTGCAGAGAAGGTAGATTTGAGGAGGCTCTAGATATGGTTGAGAATCTTCCACATGAGGGTGTCTATTTGAACAAAGGCAGTTACAGGATAGTGCTAAATTCCTTAACCCAAAATTGTGACTTGAACAAGGCAAATAAATTATTAGGACTAATGCTAGGTAGGGGATTTCTACCCCATTATGCTACCTCAAATGAATTATTGGTTTCTCTTTGCAAGGCTAGAATGGCTGATGATGCTGCGATGGCTCTATTTGGCTTGGTTGAGATGGGTTTCCAGCCAGGACCTGATTCTTGGGGACTTCTGATTGAGTTAATTTGCAGAGACAGAAAGTTACTTTATGTTTTTGAGCTGCTTGATGAGTTAGTGATCACAAATTCTTGA 1704 0.3815 MNLCFQLRGCIVEKELHISITVLNSYNNINNKYLMIFAVNHSHFINSGICIQYLDFMKVSVTCFSRHNYASLSRSLSSLPWISPLQLKKAAEPKPDPPPEPPMETWKKRNYLSHETAINLIKREKDPQHALKIFNMVSEQKGFNHNNATYATILEKLAQSKKFQAVDRVLHQMTYEACKFHEGIFINLMKHFSKSSMYEKVLQTFFNIQPVVREKPSPKAISTCLNLLVDSNQVDLARQLLLHAKRSLTHKPNVCVFNILVKYHCKNGDLDSAFEVVEEMRNSKFSYPNLITYSTLMNGLCQNGRLKEAFEIFEEMVSKDRIVPDPMTYNVLINGFCRGGKPNHARNVIEFMKNNGCRPNVINYSALVNGLSKVGKLQDAKEVFAEMRSSGLKPDTVCYTSLINYVCRNGQIDEAIELLKEMKENECQPDTVTFNVILGGLCREGRFEEALDMVENLPHEGVYLNKGSYRIVLNSLTQNCDLNKANKLLGLMLGRGFLPHYATSNELLVSLCKARMADDAAMALFGLVEMGFQPGPDSWGLLIELICRDRKLLYVFELLDELVITNS 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0456 567 Pfam PPR repeat 468 497 IPR002885 -
Lal21g0456 567 Gene3D Tetratricopeptide repeat domain 389 458 IPR011990 GO:0005515
Lal21g0456 567 Gene3D Tetratricopeptide repeat domain 87 281 IPR011990 GO:0005515
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 468 499 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 291 325 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 397 431 IPR002885 -
Lal21g0456 567 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Lal21g0456 567 SUPERFAMILY TPR-like 217 455 IPR011990 GO:0005515
Lal21g0456 567 Pfam PPR repeat family 394 443 IPR002885 -
Lal21g0456 567 Pfam PPR repeat family 288 338 IPR002885 -
Lal21g0456 567 Gene3D Tetratricopeptide repeat domain 459 566 IPR011990 GO:0005515
Lal21g0456 567 Gene3D Tetratricopeptide repeat domain 282 388 IPR011990 GO:0005515
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Lal21g0456 567 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 72 565 - -
Lal21g0456 567 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 72 565 - -
Lal21g0456 567 Pfam PPR repeat 355 388 IPR002885 -
Lal21g0456 567 Pfam PPR repeat 250 281 IPR002885 -
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Lal21g0456 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0456 Lal-Chr21 3224813 3242827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0456 253 563 Glycosyltransferase AT1G05670 27.974 2.60e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0456 - - mtr:MTR_3g100600 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0456 21 3224813 3242827 Lal21g0456 21 3224813 3242827 ECH