Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0433 ATGACATCCTCTAAGAGACCGAATTCGGAATCGAGTGGGAAAAGGAAAAGGAAAGGGAAACGTCGTAAGTCGTTAAGTGGTTTTTCGCCATTTGATATCACTCCAGGGAGTGTTGTATTCCGTTTACTTTGTCCGGCTACAAGAATTGGCGGTGTTATAGGTAAAGGTGGCTCTGTTGTGACACAAATTCGCAATGAAACCGGTGTTAAGCTTAAAATCGAGGAACCTGTTCCGCATTGTGACGAAAGAGTTATTACTATTCTTGGTGATAGTAAAGACACTGAAGATGATACTGAGCAGGGAAAGGAGGCTAATAATAATGAGGCCGATACGGATAGTAAAGAGAAGGATGATGAGATGAAAGATGATGGAGATGATAATTATGAAGATCAAGATTCTGCTCCTATTGAAGATTCGAAGATTGAGAAGGAAAGTACGTCTATTCTTAAAGCTCTATCTCTTCTTTTTGAGAGGATTGTTGGTCGAATAGAGGAGTCAGCTGAAGGTGATAGAGAAAGTAATAGGTCCTCGGTCGTTGTTTTTAGGCTGCTTGTCCTTTCAAGCCAAGTTGGATGCCTTCTTGGAAAGGGTGGTAGTGTGATAAAGAAAATGTCGGCTGATAGTGGGGCACAGATTCGGATCCTTCCTAAAGACAACCTTCCTGTTTGTGCATCGGCTTCTGATGAGCTTGTTCAGATCACAGGGGATGTTGAAGCTGTCAGGAAAGCATTTCGATCTATTTCCAAGCAACTTTTTGAAAATCCGCCCCAGGATCATGAATCTATATCTGGCAATTCTGCAGGGCTGCCATCTCATTCATTTGGTCAAGTCGCACCACACAACCGCAGCTTTGCTTCTGGATCTCATGATATTTCTTCTCCTGATCTGATTCCCAAATTTCATGAAGGTGCCATCCTTGGTCGCTTGAGGCCTTCACAGGAAATGCTCACGTTTCGTTTACTGTGTCCAGCCGATAAGGTAGGAAGTATAATTGGCAAAGGTGGAGCAATAATAAAGGCTCTGCAGCATGAAACAGCTTGTGAAATTAAGGTTATGGAAGCCGATCAAGAGTCTGGGGAGTGCATTATTGTCATATCTGGTCCAGCGCATCCAGATGATAGAATATCTCCTGTGCAAGAGGCTGTATTTCATGTGCAAGGTAGAATTGCCAGGGCTATACCTGATCCCGAAGAGCATGGCATGTTAGCTAGACTTCTCGTTTCTTCTAGTCAAATAGGTTGTCTCCTTGGCAAGTCTGGTTCCATCATAAATGAAATGAGGAAGTTATCAGGGGCCCATATCCGCATATTAGGAAAGGATAAGGTTCCAAGCTGTGCTTCAGAGGATGAAGAAGTAATTCAGATAAATGGAGAATTTGAGGCAGTGCACGATGCTCTTTTGCAAGTAACCAGTAGATTAAGACATAATTTCTTTCGCAGTGCATTTCCATCAGCCAATTATCCTTCAAATTCTGTGTTTCTGGATCAGTTTCCTCGATTCCCGCCACACTTGGGAAGGCGTGGACTTTCGCCTCCAGGCATATTCTCTAACAGGGGACCTCCACCTCCACATGGGGGTTTTCCCCTTGATGACCGTCCTCCTTTTATGAATAATATACATAGACTAGGCATTCCGCCTCACTTGTCTGAAAATAGGCCTTGGGCCCCTCAGGGGCTTCTCGAAGGTGGTGGACCTATGGGTCTGCCAGATTTTGCTGGAGGTCCTTCTAGAAGAATTCCAGACTTTGTAGGAGGGAGGCAACCAATCATCACAAGTACCACTGTTGAAGTAGTTGTTCCTCGAAAGTTGGTGCCTGTAATATATGGGGAGGATGGTGAATGCCTGAAACAAATACTTGAGATTTCGGATGCAAATATTACTATTACTGATCCGAAGCCTGGAGCTGTTGAAACCAAAATTATAATATCTGGAACTCCAGAGCAAACTCATGCTGCACAGAGTCTTATTCAGGCATTTGTGTTGAGCGAGAGGGAGTCTGGATGA 2004 0.4396 MTSSKRPNSESSGKRKRKGKRRKSLSGFSPFDITPGSVVFRLLCPATRIGGVIGKGGSVVTQIRNETGVKLKIEEPVPHCDERVITILGDSKDTEDDTEQGKEANNNEADTDSKEKDDEMKDDGDDNYEDQDSAPIEDSKIEKESTSILKALSLLFERIVGRIEESAEGDRESNRSSVVVFRLLVLSSQVGCLLGKGGSVIKKMSADSGAQIRILPKDNLPVCASASDELVQITGDVEAVRKAFRSISKQLFENPPQDHESISGNSAGLPSHSFGQVAPHNRSFASGSHDISSPDLIPKFHEGAILGRLRPSQEMLTFRLLCPADKVGSIIGKGGAIIKALQHETACEIKVMEADQESGECIIVISGPAHPDDRISPVQEAVFHVQGRIARAIPDPEEHGMLARLLVSSSQIGCLLGKSGSIINEMRKLSGAHIRILGKDKVPSCASEDEEVIQINGEFEAVHDALLQVTSRLRHNFFRSAFPSANYPSNSVFLDQFPRFPPHLGRRGLSPPGIFSNRGPPPPHGGFPLDDRPPFMNNIHRLGIPPHLSENRPWAPQGLLEGGGPMGLPDFAGGPSRRIPDFVGGRQPIITSTTVEVVVPRKLVPVIYGEDGECLKQILEISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVLSERESG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0433 667 MobiDBLite consensus disorder prediction 88 121 - -
Lal21g0433 667 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 2 528 - -
Lal21g0433 667 SMART kh_6 591 661 IPR004087 GO:0003676
Lal21g0433 667 SMART kh_6 177 252 IPR004087 GO:0003676
Lal21g0433 667 SMART kh_6 314 394 IPR004087 GO:0003676
Lal21g0433 667 SMART kh_6 399 474 IPR004087 GO:0003676
Lal21g0433 667 SMART kh_6 36 110 IPR004087 GO:0003676
Lal21g0433 667 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Lal21g0433 667 ProSiteProfiles Type-1 KH domain profile. 315 382 - -
Lal21g0433 667 Pfam KH domain 40 94 IPR004088 GO:0003723
Lal21g0433 667 Pfam KH domain 404 469 IPR004088 GO:0003723
Lal21g0433 667 Pfam KH domain 181 247 IPR004088 GO:0003723
Lal21g0433 667 Pfam KH domain 317 369 IPR004088 GO:0003723
Lal21g0433 667 Pfam KH domain 594 657 IPR004088 GO:0003723
Lal21g0433 667 CDD PCBP_like_KH 317 386 - -
Lal21g0433 667 MobiDBLite consensus disorder prediction 88 140 - -
Lal21g0433 667 Gene3D K Homology domain, type 1 590 664 IPR036612 GO:0003723
Lal21g0433 667 ProSiteProfiles Type-1 KH domain profile. 592 656 - -
Lal21g0433 667 MobiDBLite consensus disorder prediction 1 30 - -
Lal21g0433 667 CDD PCBP_like_KH 404 470 - -
Lal21g0433 667 ProSiteProfiles Type-1 KH domain profile. 37 105 - -
Lal21g0433 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 314 402 IPR036612 GO:0003723
Lal21g0433 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 31 93 IPR036612 GO:0003723
Lal21g0433 667 CDD PCBP_like_KH 39 90 - -
Lal21g0433 667 Gene3D K Homology domain, type 1 36 103 IPR036612 GO:0003723
Lal21g0433 667 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 2 528 - -
Lal21g0433 667 CDD KH-I 594 657 - -
Lal21g0433 667 Gene3D K Homology domain, type 1 313 391 IPR036612 GO:0003723
Lal21g0433 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 255 IPR036612 GO:0003723
Lal21g0433 667 Gene3D K Homology domain, type 1 399 476 IPR036612 GO:0003723
Lal21g0433 667 Gene3D K Homology domain, type 1 176 256 IPR036612 GO:0003723
Lal21g0433 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 399 478 IPR036612 GO:0003723
Lal21g0433 667 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 592 662 IPR036612 GO:0003723
Lal21g0433 667 CDD PCBP_like_KH 180 248 - -
Lal21g0433 667 ProSiteProfiles Type-1 KH domain profile. 400 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0433 Lal-Chr21 3001535 3010295 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0433 K21444 - gmx:100785136 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0433 21 3001535 3010295 Lal21g0433 21 3001535 3010295 ECH