Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0415 ATGACAAAGTTGTCCAATGTTGTAAGCAATGCAGAATTGTTATCTGCTAAGCTATTGAGACTCTTGATGATGGATCTGTTTGGTGCTGGGGTTACAATCTCTGTATCCTTAAAATGTTTGGAGTCCCTTGGTAGGATTCAGTTTCAGATATTACTTATTTATGACTTTATATTACATATTATTATCCACATCCTTGACTATTGTATGGATGGTCAACTTGGTATCAATGGAGAGGACTCCCATGACATAAATTATACTGGCCGAGATTATTCTCTAGTGCCCTGCTTGCTGAATAAGTTTCTTGAGTTGCATGTTCCTGATTCTTCAACAGGTACGCCTGAAGCGGAAGACAAAGAATCACTAAAGATATGTGCCGTGAAAGCAGGAGGCATGATGTCTCTGGCTATTGATAATCATGGGGCGCTATGGATATGGGGAAACTGCCCACAAAAAATCAAAGAAGGCGAGTTATCTCTTGTAAGCAGTTTCACACCAACACCAGTATGGGATTTCCACGGTCACACGGTCGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTAGTGCTGAAGAATCATACAAGGGTGAAGATCTAGTGTGCTACTCTTGGGGTTGTAACAGCCATGGCCAATTAGGCTTAGGAGATAGGGATAGCAGGTCGCGTCCAGAAATTGTGAAAACATTTGATAAGGAGTCCCCTTGGGCAGTTTATGAAGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAAACCTCGTGATACATTAGAAAGCACATGTTGGACTTTTGGTCTTGGGGATAATGGGCAACTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAATGAATTGCCACAAAATGTGTTTTTTATTTCAGTTGACTGTGGATTGTTTCATACAAGTGCCGTTTCCTCAGCCGGGGATGTTTGGTCATGGGGAATGGAGAAGGGTCTTGGTTTATGCCCTGATGCTAGTCATTCAGAAGCAGATTCTGGTGATGCTCTCTCACCACTTCTTATCTCACGAAAGCCGCATCAACCTCAATTTCCGGATCCTGTTCAAGTAGCATGTGGCGCTGCACATACTGTTATTGTTGCACAGGAGGGATACAAGATATGGTCTTGGGGTAGGGGAAGGAGTGGAGCTCTTGGAAATGGTAGGGAAGTGGATTCTTACACTCCCACCATAGTTCTATGGCCTCCACTGATAGAGGATTTCAAGGAAGAGGAATTAAAGAGCGGTGACGAGCAAGATAAGGTTAAAGGAAAAGAGACCGAAGCGTCAACAGAAACAGATGAGAAATTATCATCAGCACTGAATGAGGTGAAGCTGCTTCAAAGCAAGCTATCAACAATGGAAAAGTACGCAGGTATTCTTCATGGTTGTGTTTTTGGAAAACCTTTTGTCGAACAAGATATCCCAGCTTCATTGCGGAATTCGGGTTCATTTGACATAGCAAAAGAATGGGAGAACATGTTAGAAGCAGCAGATCATAGGAACCTAAGTAGGTTGGAGATGTTCTATAGGGACATGCTTGCTGGTGTGAAAGATAAACTGATGAAGAGAAGGATAAAGGAAATTATAACTGAGTGCCTCCAATCTTCAGAGGTGAAAAAGTAG 1650 0.4255 MTKLSNVVSNAELLSAKLLRLLMMDLFGAGVTISVSLKCLESLGRIQFQILLIYDFILHIIIHILDYCMDGQLGINGEDSHDINYTGRDYSLVPCLLNKFLELHVPDSSTGTPEAEDKESLKICAVKAGGMMSLAIDNHGALWIWGNCPQKIKEGELSLVSSFTPTPVWDFHGHTVVKVACGNEHVVALVSAEESYKGEDLVCYSWGCNSHGQLGLGDRDSRSRPEIVKTFDKESPWAVYEVACGAFHTALLTHKKKPRDTLESTCWTFGLGDNGQLGHGTTQSTLFPTPVNELPQNVFFISVDCGLFHTSAVSSAGDVWSWGMEKGLGLCPDASHSEADSGDALSPLLISRKPHQPQFPDPVQVACGAAHTVIVAQEGYKIWSWGRGRSGALGNGREVDSYTPTIVLWPPLIEDFKEEELKSGDEQDKVKGKETEASTETDEKLSSALNEVKLLQSKLSTMEKYAGILHGCVFGKPFVEQDIPASLRNSGSFDIAKEWENMLEAADHRNLSRLEMFYRDMLAGVKDKLMKRRIKEIITECLQSSEVKK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0415 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 316 IPR000408 -
Lal21g0415 549 Gene3D - 68 444 IPR009091 -
Lal21g0415 549 MobiDBLite consensus disorder prediction 420 443 - -
Lal21g0415 549 Pfam Regulator of chromosome condensation (RCC1) repeat 204 252 IPR000408 -
Lal21g0415 549 Pfam Regulator of chromosome condensation (RCC1) repeat 266 313 IPR000408 -
Lal21g0415 549 Pfam Regulator of chromosome condensation (RCC1) repeat 317 374 IPR000408 -
Lal21g0415 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 201 255 IPR000408 -
Lal21g0415 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 378 IPR000408 -
Lal21g0415 549 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 192 IPR000408 -
Lal21g0415 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 72 549 - -
Lal21g0415 549 MobiDBLite consensus disorder prediction 420 441 - -
Lal21g0415 549 SUPERFAMILY RCC1/BLIP-II 71 411 IPR009091 -
Lal21g0415 549 PRINTS Chromosome condensation regulator RCC1 signature 202 218 IPR000408 -
Lal21g0415 549 PRINTS Chromosome condensation regulator RCC1 signature 239 252 IPR000408 -
Lal21g0415 549 PRINTS Chromosome condensation regulator RCC1 signature 382 396 IPR000408 -
Lal21g0415 549 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 242 252 IPR000408 -
Lal21g0415 549 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 72 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0415 Lal-Chr21 2884160 2886538 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0415 - - gmx:100815199 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0415 21 2884160 2886538 Lal21g0415 21 2884160 2886538 ECH